Repository details
BioDeep Database
Name of repository
BioDeep Database
Additional name(s)
- BioDeep Portal
Repository URL
Subject(s)
Description
The BioDeep database is a comprehensive database of metabolite information in living organisms: by aggregating metabolite information from multiple public databases and large-scale natural language text mining work, we have built a large scale knowledge network for biological knowledge interpretation. By using the BioDeep database, it is possible to query such large scale metabolic knowledge network.
Contact(s)
- biodeep@bionovogene.com
Keyword(s)
Repository size
1 million metabolites; more than 30 million experimental mass spectrum; 100 organism species distribution
Repository type(s)
- disciplinary
Mission statement for designated community
Research data repository language(s)
- English
- Chinese
- French
Data and/or service provider
- serviceProvider
Institutions (1)
Policies (1)
Policy Name
Database access
Type of access to research data repository
open
Data access (1)
Type of access to data
restricted
Data access restriction type(s)
- registration
Data licenses (1)
DataLicense
Data upload (1)
Type of data upload
closed
Name of the repository software
- MySQL
- other
Versioning
no
Enhanced Publication
yes
Quality management
unknown
Remarks
Remarks
Metabolite information in the database is publicly accessible, but access to experimental mass spectra, LCMS chromatography information, and organism species detection distribution results requires logging in with a registered account. Access to the database API also requires logging in with a registered account. Currently, the database does not provide bulk download of datasets.
Entry date
2024-09-02
Last update
2024-09-05
Cite this re3data.org record:
re3data.org: BioDeep Database; editing status 2024-09-05; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJNM9 last accessed: 2025-05-09- Current projects
- EOSC FAIR-IMPACT
-
To the extent possible under law,
re3data.org
has waived all copyright and related or neighboring rights to
the database entries of re3data.org.
-
Except where otherwise noted, content on this site is licensed under a
Creative Commons Attribution 4.0 International License
.
- Cite this service: re3data.org - Registry of Research Data Repositories. https://doi.org/10.17616/R3D last accessed: 2025-05-09
