Repository details
CIS-BP
Name of repository
CIS-BP
Additional name(s)
- Catalog of Inferred Sequence Binding Preferences
Repository URL
Description
The Catalog of Inferred Sequence Binding Preferences (CIS-BP) is a library of transcription factor (TF) DNA binding motifs and specificities. The data are organized in a user friendly manner for ease of searching, browsing, and downloading. CIS-BP also includes built-in web tools for scanning DNA sequences for putative TF binding sites, predicting the DNA binding motif of a given TF, and identifying a TF that might recognize a given DNA motif.
Contact
- matthew.weirauch@cchmc.org
- http://cisbp.ccbr.utoronto.ca/contact.php
Content type(s)
Keyword(s)
Persistent identifier(s) of the repository
- RRID:SCR_017236
Repository size
1.491 motifs; 165.030 TFs with at least one binding motif (4.559 from direct experiments), out of a total of 392.333 TFs from 321 families in 741 species
Repository type(s)
- disciplinary
Mission statement for designated community
Research data repository language(s)
- English
Data and/or service provider
- data provider
Institution name
Identifier(s)
- ROR:01hcyya48
Country
Type(s) of responsibility
- general
Type of institution
non-profit
Institution name
Identifier(s)
- ROR:03dbr7087
Country
Type(s) of responsibility
- general
Type of institution
non-profit
Database access
Type of access to research data repository
open
Data access (1)
Type of access to data
open
Data licenses (2)
DataLicense
DataLicense
Data upload (1)
Type of data upload
restricted
Data upload restriction type(s)
- other
Data citation guideline
Enhanced Publication
unknown
Quality management
unknown
Metadata standards (2)
Remarks
Remarks
Note: many motifs derived from Transfac require a license – hence, we do not provide these motifs, and instead indicate that a “Transfac license is required.”
Entry date
2022-09-13
Last update
2022-09-16
Cite this re3data.org record:
re3data.org: CIS-BP; editing status 2022-09-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJN9V last accessed: 2024-04-27- Current projects
- EOSC FAIR-IMPACT
- re3data COREF
-
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has waived all copyright and related or neighboring rights to
the database entries of re3data.org.
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Except where otherwise noted, content on this site is licensed under a
Creative Commons Attribution 4.0 International License
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- Cite this service: re3data.org - Registry of Research Data Repositories. https://doi.org/10.17616/R3D last accessed: 2024-04-27
