Repository details

BioSimulations

Name of repository
BioSimulations
Repository URL
https://biosimulations.org/
Subject(s)
Description
BioSimulations is a web application for sharing and re-using biomodels, simulations, and visualizations of simulations results. BioSimulations supports a wide range of modeling frameworks (e.g., kinetic, constraint-based, and logical modeling), model formats (e.g., BNGL, CellML, SBML), and simulation tools (e.g., COPASI, libRoadRunner/tellurium, NFSim, VCell). BioSimulations aims to help researchers discover published models that might be useful for their research and quickly try them via a simple web-based interface.
Contact(s)
Content type(s)
Keyword(s)
Persistent identifier(s) of the repository
Repository type(s)
  • disciplinary
Mission statement for designated community
https://docs.biosimulations.org/
Research data repository language(s)
  • English
Data and/or service provider
  • dataProvider
  • serviceProvider

Institutions (8)

Institution
Center for Reproducible Biomodeling Modeling
Country
United States
Type(s) of responsibility
  • funding
Type of institution
non-profit
Institution
Icahn School of Medicine at Mount Sinai
Institution
Country
United States
Type(s) of responsibility
  • technical
Type of institution
non-profit
Institution
Icahn School of Medicine at Mount Sinai , Institute for Multiscale Biology & Genomics, Karr Lab
Country
United States
Type(s) of responsibility
  • general
Type of institution
non-profit
Institution
National Institute of General Medical Sciences
Additional name(s)
  • NIGMS
Institution
Country
United States
Type(s) of responsibility
  • funding
Type of institution
non-profit
Institution
National Institutes of Health
Additional name(s)
  • NIH
Institution
Country
United States
Type(s) of responsibility
  • funding
Type of institution
non-profit
Institution
National Institutes of Health, National Institute of Biomedical Imaging and Bioengineering
Additional name(s)
  • NIH, IBIB
Institution
Country
United States
Type(s) of responsibility
  • funding
Type of institution
non-profit
Institution
National Science Foundation
Additional name(s)
  • NSF
Institution
Country
United States
Type(s) of responsibility
  • funding
Type of institution
non-profit
Institution
University of Connecticut Health Center, Center for Cell Analysis and Modeling
Additional name(s)
  • UConn Health, Richard D. Berlin Center for Cell Analysis and Modeling
Country
United States
Type(s) of responsibility
  • technical
Type of institution
non-profit

Policies (3)

Policy Name
Terms of service
Policy Name
Privacy policy
Policy Name
Code of conduct for developers of the BioSimulations and BioSimulators platforms

Database access

Type of access to research data repository
open

Data access (1)

Type of access to data
open

Data licenses (2)

DataLicense
Copyrights
DataLicense
other

Data upload (1)

Type of data upload
restricted
Data upload restriction type(s)
  • registration
Name of the repository software
  • other
Versioning
yes
Data citation guideline
https://docs.biosimulations.org/about/citations/
Quality management
yes

Application programming interfaces (1)

Type
REST
Url
https://api.biosimulations.org/
documentation
https://api.biosimulations.org/

Remarks

Entry date
2020-06-18
Last update
2025-07-30
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Cite this re3data.org record:

re3data.org: BioSimulations; editing status 2025-07-30; re3data.org - Registry of Research Data Repositories. https://doi.org/10.17616/R31NJMSX last accessed: 2025-09-10