Repository details
Datanator
Name of repository
Datanator
Repository URL
Subject(s)
Description
Datanator is an integrated database of genomic and biochemical data designed to help investigators find data about specific molecules and reactions in specific organisms and specific environments for meta-analyses and mechanistic models. Datanator currently includes metabolite concentrations, RNA modifications and half-lives, protein abundances and modifications, and reaction kinetics integrated from several databases and numerous publications. The Datanator website and REST API provide tools for extracting clouds of data about specific molecules and reactions in specific organisms and specific environments, as well as data about similar molecules and reactions in taxonomically similar organisms.
Contact
- info@karrlab.org
Keyword(s)
Persistent identifier(s) of the repository
- FAIRsharing_DOI:10.25504/FAIRsharing.NmIgg9
Repository type(s)
- disciplinary
Mission statement for designated community
Research data repository language(s)
- English
Data and/or service provider
- data provider
Institution name
Additional name(s)
- Mount Sinai School of Medicine
Identifier(s)
- ROR:04a9tmd77
- RRID:SCR_005793
Contact(s)
- karr@mssm.edu
Country
Type(s) of responsibility
- technical
- general
Type of institution
non-profit
Start date of responsibility
2017-02-17
Institution name
Contact(s)
- karr@mssm.edu
Country
Type(s) of responsibility
- general
Type of institution
non-profit
Policies (1)
Policy Name
Database access
Type of access to research data repository
open
Database licenses (1)
Database License
Data access (1)
Type of access to data
open
Data licenses (1)
DataLicense
Data upload (1)
Type of data upload
restricted
Data upload restriction type(s)
- other
Versioning
yes
Enhanced Publication
unknown
Quality management
yes
Application programming interfaces (1)
API type
Remarks
Remarks
Currently, Datanator includes measured metabolite concentrations, RNA modifications and half-lives, protein abundances and modifications, and reaction rate parameters integrated from BRENDA, ECMDB, MODOMICS, PAX-DB, the Protein Ontology (PRO), SABIO-RK, YMDB, and numerous publications.
Entry date
2020-05-23
Last update
2024-04-24
Cite this re3data.org record:
re3data.org: Datanator; editing status 2024-04-24; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMSB last accessed: 2024-09-13- Current projects
- EOSC FAIR-IMPACT
- re3data COREF
-
To the extent possible under law,
re3data.org
has waived all copyright and related or neighboring rights to
the database entries of re3data.org.
-
Except where otherwise noted, content on this site is licensed under a
Creative Commons Attribution 4.0 International License
.
- Cite this service: re3data.org - Registry of Research Data Repositories. https://doi.org/10.17616/R3D last accessed: 2024-09-13
