Repository details
TopFIND
Name of repository
TopFIND
Additional name(s)
- The public knowledgebase for protein termini and protease processing
Repository URL
Subject(s)
Description
TopFIND is a protein-centric database for the annotation of protein termini currently in its third version. Non-canonical protein termini can be the result of multiple different biological processes, including pre-translational processes such as alternative splicing and alternative translation initiation or post-translational protein processing by proteases that cleave proteases as part of protein maturation or as a regulatory modification. Accordingly, protein termini evidence in TopFIND is inferred from other databases such as ENSEMBL transcripts, TISdb for alternative translation initiation, MEROPS for protein cleavage by proteases, and UniProt for canonical and protein isoform start sites.
Contact(s)
- topfind.clip@msl.ubc.ca
Keyword(s)
Persistent identifier(s) of the repository
- RRID:nlx_151607
- RRID:SCR_008918
- other:OMICS_10578
- FAIRsharing:10.25504/FAIRsharing.rkpmhn
Repository size
331.278 natural and neo N- and C-termini and 35.044 protease cleavages sites listed
Repository type(s)
- disciplinary
Mission statement for designated community
Research data repository language(s)
- English
Data and/or service provider
- dataProvider
Institutions (1)
Additional name(s)
- UBC
Country
Type(s) of responsibility
- general
- technical
Type of institution
non-profit
Policies (1)
Policy Name
Database access
Type of access to research data repository
open
Data access (1)
Type of access to data
open
Data licenses (1)
DataLicense
Data upload (1)
Type of data upload
restricted
Data upload restriction type(s)
- registration
Data upload license (1)
Data upload license name
Name of the repository software
- unknown
Versioning
yes
Data citation guideline
Enhanced Publication
unknown
Quality management
unknown
Metadata standards (1)
Metadata standard
Remarks
Entry date
2018-07-04
Last update
2023-03-01
Cite this re3data.org record:
re3data.org: TopFIND; editing status 2023-03-01; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3KB8J last accessed: 2025-04-26- Current projects
- EOSC FAIR-IMPACT
-
To the extent possible under law,
re3data.org
has waived all copyright and related or neighboring rights to
the database entries of re3data.org.
-
Except where otherwise noted, content on this site is licensed under a
Creative Commons Attribution 4.0 International License
.
- Cite this service: re3data.org - Registry of Research Data Repositories. https://doi.org/10.17616/R3D last accessed: 2025-04-26
