Repository details

Human Genetic Variation Repository

Name of repository
Human Genetic Variation Repository
Additional name(s)
  • HGVD
Repository URL
https://www.hgvd.genome.med.kyoto-u.ac.jp/index.html
Subject(s)
Description
The Human Genetic Variation Database (HGVD) aims to provide a central resource to archive and display Japanese genetic variation and association between the variation and transcription level of genes. The database currently contains genetic variations determined by exome sequencing of 1,208 individuals and genotyping data of common variations obtained from a cohort of 3,248 individuals.
Contact(s)
Keyword(s)
Persistent identifier(s) of the repository
Repository size
1.208 samples of exome sequencing data
Repository type(s)
  • disciplinary
Research data repository language(s)
  • English
Data and/or service provider
  • dataProvider
  • serviceProvider

Institutions (6)

Institution
Kyoto University
Additional name(s)
  • KU
  • 京都大学
Institution
Country
Japan
Type(s) of responsibility
  • general
  • technical
Type of institution
non-profit
Institution
Ministry of Health, Labour and Welfare
Additional name(s)
  • 厚生労働省
  • MHLW
Institution
Country
Japan
Type(s) of responsibility
  • funding
Type of institution
non-profit
Institution
National Center for Child Health and Development
Additional name(s)
  • NCCHD
  • 国立児童衛生研究所
Institution
Country
Japan
Type(s) of responsibility
  • general
Type of institution
non-profit
Institution
The University of Tokyo
Additional name(s)
  • UT
  • 東京大学
Institution
Country
Japan
Type(s) of responsibility
  • general
Type of institution
non-profit
Institution
Tohoku University
Additional name(s)
  • TU
  • 東北大学
Institution
Country
Japan
Type(s) of responsibility
  • general
Type of institution
non-profit
Institution
Yokohama City University
Additional name(s)
  • YCU
  • 横浜市立大学
Institution
Country
Japan
Type(s) of responsibility
  • general
Type of institution
non-profit

Policies (2)

Policy Name
Terms of Service
Policy Name
Data Content and Organization

Database access

Type of access to research data repository
open

Data access (2)

Type of access to data
open
Type of access to data
restricted
Data access restriction type(s)
  • other

Data licenses (2)

DataLicense
Public Domain
DataLicense
Copyrights

Data upload (1)

Type of data upload
closed
Persistent identifier system(s)
  • none
Name of the repository software
  • unknown
Versioning
yes
Data citation guideline
https://www.hgvd.genome.med.kyoto-u.ac.jp/about.html
Enhanced Publication
unknown
Quality management
unknown

Remarks

Entry date
2017-08-09
Last update
2024-01-19
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Cite this re3data.org record:

re3data.org: Human Genetic Variation Repository; editing status 2024-01-19; re3data.org - Registry of Research Data Repositories. https://doi.org/10.17616/R3T46W last accessed: 2025-06-10