Repository details

4DGenome

⚠ Caution: This entry is annotated as "Closed: 2025-09-24". If you believe this is incorrect, please submit a change request.
Name of repository
4DGenome
Additional name(s)
  • Chromatin Interaction Database
Repository URL
https://4dgenome.research.chop.edu/
Subject(s)
Description
<<<!!!<<< This repository is no longer available. >>>!!!>>> 4DGenome is a public database that archives and disseminates chromatin interaction data. Currently, 4DGenome contains over 8,038,247 interactions curated from both experimental studies (high throughput and individual studies) and computational predictions. It covers five organisms, Homo sapiens, Mus musculus, Drosophila melanogaster, Plasmodium falciparum, and Saccharomyces cerevisiae.
Contact(s)
  • administrative: 4dgenome@gmail.com
  • administrative: kai-tan@uiowa.edu
Keyword(s)
Persistent identifier(s) of the repository
Repository size
4.433.071 experimentally-derived interactions; 3.605.176 computationally-predicted interactions
Repository type(s)
  • disciplinary
Mission statement for designated community
https://4dgenome.research.chop.edu/About.html
Research data repository language(s)
  • English
Data and/or service provider
  • dataProvider

Dates

Started
2014-08-15
Closed
2025-09-24

Institutions (3)

Institution name
Children's Hospital of Philadelphia, Division of Oncology, Department of Pediatrics
Country
United States
Type(s) of responsibility
  • general
  • technical
Type of institution
non-profit
Institution name
National Institutes of Health
Additional name(s)
  • NIH
Institution identifier(s)
Country
United States
Type(s) of responsibility
  • funding
Type of institution
non-profit
Institution name
University of Pennsylvania, Perelman School of Medicine, Department of Pediatrics
Country
United States
Type(s) of responsibility
  • general
Type of institution
non-profit

Database access

Type of access to research data repository
open

Data access (1)

Type of access to data
open

Data licenses (2)

Data license
CC
Data license
CC

Data upload (1)

Type of data upload
restricted
Data upload restriction type(s)
  • feeRequired
Persistent identifier system(s)
  • none
Name of the repository software
  • MySQL
Data citation guideline
https://4dgenome.research.chop.edu/Download.html

Remarks

Entry date
2016-12-05
Last update
2025-10-08
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Cite this re3data.org record:

re3data.org: 4DGenome; editing status 2025-10-08; re3data.org - Registry of Research Data Repositories. https://doi.org/10.17616/R3SH37 last accessed: 2026-06-17