Repository details
DEPOD
Name of repository
DEPOD
Additional name(s)
- DEPhOsphorylation Database
Repository URL
Subject(s)
Description
DEPOD - the human DEPhOsphorylation Database (version 1.1) is a manually curated database collecting human active phosphatases, their experimentally verified protein and non-protein substrates and dephosphorylation site information, and pathways in which they are involved. It also provides links to popular kinase databases and protein-protein interaction databases for these phosphatases and substrates. DEPOD aims to be a valuable resource for studying human phosphatases and their substrate specificities and molecular mechanisms; phosphatase-targeted drug discovery and development; connecting phosphatases with kinases through their common substrates; completing the human phosphorylation/dephosphorylation network.
Repository size
241 human active and 13 inactive phosphatases in total; 194 phosphatases have substrate data; 336 protein substrates; 83 non-protein substrates; 1.215 dephosphorylation interactions; 299 KEGG pathways; 876 Reactome pathways
Repository type(s)
- disciplinary
Mission statement for designated community
Research data repository language(s)
- English
Data and/or service provider
- dataProvider
Institutions (6)
Additional name(s)
- European Molecular Biology Laboratory
Country
Type(s) of responsibility
- funding
Type of institution
non-profit
Additional name(s)
- European Molecular Biology Laboratory Hamburg, Wilmanns Group
Country
Type(s) of responsibility
- general
Type of institution
non-profit
Additional name(s)
- European Molecular Biology Laboratory, European Bioinformatics Institute, Thornton group
Country
Type(s) of responsibility
- general
Type of institution
non-profit
Additional name(s)
- Marie Skłodowska-Curie Actions
Country
Type(s) of responsibility
- funding
Type of institution
non-profit
Additional name(s)
- EIPOD
- EMBL, Interdisciplinary Postdocs initiative
Country
Type(s) of responsibility
- funding
Type of institution
non-profit
Country
Type(s) of responsibility
- technical
- general
Type of institution
non-profit
Policies (4)
Policy Name
Policy Name
Policy Name
Policy Name
Database access
Type of access to research data repository
open
Data access (1)
Type of access to data
open
Data licenses (2)
DataLicense
DataLicense
Data upload (1)
Type of data upload
restricted
Data upload restriction type(s)
- other
Persistent identifier system(s)
- none
Name of the repository software
- unknown
Versioning
yes
Data citation guideline
Enhanced Publication
yes
Quality management
yes
Remarks
Remarks
DEPOD was started as a part of the collaborative project between three groups: the Thornton Group (EMBL-EBI, Hinxton, UK), the Köhn Group (Faculty of Biology and BIOSS, University of Freiburg) and the Wilmanns Group (EMBL, Hamburg, Germany).
The database is currently maintained and updated by Dr. Guangyou Duan, IMIA net based solutions and Köhn Group (Faculty of Biology and BIOSS, University of Freiburg).
Entry date
2016-02-17
Last update
2024-05-15
Cite this re3data.org record:
re3data.org: DEPOD; editing status 2024-05-15; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GP9F last accessed: 2025-04-26- Current projects
- EOSC FAIR-IMPACT
-
To the extent possible under law,
re3data.org
has waived all copyright and related or neighboring rights to
the database entries of re3data.org.
-
Except where otherwise noted, content on this site is licensed under a
Creative Commons Attribution 4.0 International License
.
- Cite this service: re3data.org - Registry of Research Data Repositories. https://doi.org/10.17616/R3D last accessed: 2025-04-26
