Repository details

DEPOD

Name of repository
DEPOD
Additional name(s)
  • DEPhOsphorylation Database
Repository URL
http://depod.bioss.uni-freiburg.de/
Subject(s)
Description
DEPOD - the human DEPhOsphorylation Database (version 1.1) is a manually curated database collecting human active phosphatases, their experimentally verified protein and non-protein substrates and dephosphorylation site information, and pathways in which they are involved. It also provides links to popular kinase databases and protein-protein interaction databases for these phosphatases and substrates. DEPOD aims to be a valuable resource for studying human phosphatases and their substrate specificities and molecular mechanisms; phosphatase-targeted drug discovery and development; connecting phosphatases with kinases through their common substrates; completing the human phosphorylation/dephosphorylation network.
Contact
  • depod@bioss.uni-freiburg.de
Content type(s)
Keyword(s)
Persistent identifier(s) of the repository
  • FAIRsharing_doi:10.25504/FAIRsharing.q9j2e3
  • MIR:00000428
Repository size
241 human active and 13 inactive phosphatases in total; 194 phosphatases have substrate data; 336 protein substrates; 83 non-protein substrates; 1.215 dephosphorylation interactions; 299 KEGG pathways; 876 Reactome pathways
Repository type(s)
  • disciplinary
Mission statement for designated community
http://depod.bioss.uni-freiburg.de/about.php
Research data repository language(s)
  • English
Data and/or service provider
  • data provider
Institution name
EMBL
Additional name(s)
  • European Molecular Biology Laboratory
Identifier(s)
  • ROR:03mstc592
Contact(s)
Country
European Union
Type(s) of responsibility
  • funding
Type of institution
non-profit
Institution name
EMBL Hamburg, Wilmanns Group
Additional name(s)
  • European Molecular Biology Laboratory Hamburg, Wilmanns Group
Contact(s)
  • matthias.wilmanns@embl-hamburg.de
Country
Germany
Type(s) of responsibility
  • general
Type of institution
non-profit
Institution name
EMBL-EBI, Thornton group
Additional name(s)
  • European Molecular Biology Laboratory, European Bioinformatics Institute, Thornton group
Contact(s)
  • thornton@ebi.ac.uk
Country
United Kingdom
Type(s) of responsibility
  • general
Type of institution
non-profit
Institution name
European Commission, Marie Skłodowska-Curie Actions
Additional name(s)
  • Marie Skłodowska-Curie Actions
Contact(s)
Country
European Union
Type(s) of responsibility
  • funding
Type of institution
non-profit
Institution name
European Molecular Biology Laboratory, Postdoctoral Programme
Additional name(s)
  • EIPOD
  • EMBL, Interdisciplinary Postdocs initiative
Contact(s)
  • eipod@embl.org
Country
European Union
Type(s) of responsibility
  • funding
Type of institution
non-profit
Institution name
University of Freiburg, BIOSS Centre for Biological Signalling Studies, Köhn Group
Contact(s)
Country
Germany
Type(s) of responsibility
  • technical
  • general
Type of institution
non-profit

Policies (4)

Policy Name
DEPOD User manual
Policy Name
Terms of Use
Policy Name
Principles of Service Provision
Policy Name
Licence and Data-protection policy

Database access

Type of access to research data repository
open

Data access (1)

Type of access to data
open

Data licenses (2)

DataLicense
Copyrights
DataLicense
Copyrights

Data upload (1)

Type of data upload
restricted
Data upload restriction type(s)
  • other
Persistent identifier system(s)
  • none
Name of the repository software
  • unknown
Versioning
yes
Data citation guideline
http://depod.bioss.uni-freiburg.de/about.php#cite
Author identifier system(s)
  • none
Enhanced Publication
yes
Quality management
yes

Remarks

Remarks
DEPOD was started as a part of the collaborative project between three groups: the Thornton Group (EMBL-EBI, Hinxton, UK), the Köhn Group (Faculty of Biology and BIOSS, University of Freiburg) and the Wilmanns Group (EMBL, Hamburg, Germany). The database is currently maintained and updated by Dr. Guangyou Duan, IMIA net based solutions and Köhn Group (Faculty of Biology and BIOSS, University of Freiburg).
Entry date
2016-02-17
Last update
2022-05-13
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Cite this re3data.org record:

re3data.org: DEPOD; editing status 2022-05-13; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GP9F last accessed: 2024-04-27