Repository details

Brain Transcriptome Database

Name of repository
Brain Transcriptome Database
Additional name(s)
  • BrainTx
  • formerly: Cerebellar Development Transcriptome Database
  • formerly: CDT-DB
Repository URL
https://www.cdtdb.neuroinf.jp/CDT/Top.jsp
Subject(s)
Description
The Brain Transcriptome Database (BrainTx) project aims to create an integrated platform to visualize and analyze our original transcriptome data and publicly accessible transcriptome data related to the genetics that underlie the development, function, and dysfunction stages and states of the brain.
Contact(s)
Keyword(s)
Persistent identifier(s) of the repository
Repository size
26.911 items
Repository type(s)
  • disciplinary
Mission statement for designated community
https://www.cdtdb.neuroinf.jp/CDT/About.jsp
Research data repository language(s)
  • English
Data and/or service provider
  • serviceProvider

Institutions (7)

Institution
International Neuroinformatics Coordinating Facility
Additional name(s)
  • INCF
Institution
Country
International
Type(s) of responsibility
  • general
Type of institution
non-profit
Start date of responsibility
2006
Institution
International Neuroinformatics Coordination Facility, National Node of Japan
Additional name(s)
  • INCF Japan Node
Country
Japan
Type(s) of responsibility
  • general
  • technical
  • funding
Type of institution
non-profit
Start date of responsibility
2006
End date of responsibility
2019
Institution
Japan Science and Technology Agency
Additional name(s)
  • 科学技術振興機構
  • JST
Institution
Country
Japan
Type(s) of responsibility
  • funding
Type of institution
non-profit
Institution
Japan Society for the Promotion of Science
Additional name(s)
  • 日本学術振興会
  • JSPS
Institution
Country
Japan
Type(s) of responsibility
  • funding
Type of institution
non-profit
Institution
Japanese Ministry of Education, Culture, Sports, Science, and Technology
Additional name(s)
  • 文部科学、技術環境省
  • MEXT
Institution
Country
Japan
Type(s) of responsibility
  • funding
Type of institution
non-profit
Institution
RIKEN Center for Brain Science
Additional name(s)
  • Formerly: RIKEN-BSI
  • Formerly: RIKEN Brain Science Insitute
  • RIKEN CBS
Institution
Country
Japan
Type(s) of responsibility
  • general
Type of institution
non-profit
Institution
RIKEN Center for Brain Science, Integrative Computational Brain Science Collaboration Center, Neuroinformatics Unit
Additional name(s)
  • Formerly: RIKEN BSI NIJC
  • Formerly: RIKEN Brain Science Institute, Neuroinformatics Japan Center
  • RIKEN CBS ICBSCC NIU
Country
Japan
Type(s) of responsibility
  • general
Type of institution
non-profit

Policies (1)

Policy Name
CDT-DB User Guide

Database access

Type of access to research data repository
open

Data access (1)

Type of access to data
open

Data licenses (2)

DataLicense
Copyrights
DataLicense
CC

Data upload (1)

Type of data upload
closed
Persistent identifier system(s)
  • none
Name of the repository software
  • unknown
Versioning
yes
Enhanced Publication
yes
Quality management
yes

Alerting services (1)

Type of alerting service
RSS

Remarks

Remarks
The database is integrated into the RIKEN integrated database of mammals of the RIKEN Scientists' Networking System (SciNetS).
Entry date
2015-05-26
Last update
2021-09-17
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Cite this re3data.org record:

re3data.org: Brain Transcriptome Database; editing status 2021-09-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3DS6Q last accessed: 2025-04-25