Repository details

SABIO-RK

Name of repository
SABIO-RK
Additional name(s)
  • System for the Analysis of Biochemical Pathways - Reaction Kinetics
  • Biochemical reation kinetics database
Repository URL
https://sabiork.h-its.org/
Subject(s)
Description
The SABIO-RK is a web-based application based on the SABIO relational database that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. It aims to support modellers in the setting-up of models of biochemical networks, but it is also useful for experimentalists or researchers with interest in biochemical reactions and their kinetics. All the data are manually curated and annotated by biological experts, supported by automated consistency checks.
Contact(s)
  • administrative: wolfgang.mueller@h-its.org
Content type(s)
Keyword(s)
Persistent identifier(s) of the repository
Repository size
75.792 entries in 10.167 reactions
Repository type(s)
  • disciplinary
Mission statement for designated community
https://sabiork.h-its.org/layouts/content/about.gsp
Research data repository language(s)
  • English
Data and/or service provider
  • dataProvider

Institutions (2)

Institution
Heidelberg Institute for Theoretical Studies
Additional name(s)
  • HITS gGmbH
  • Heidelberger Institut für Theoretische Studien
Institution
Country
Germany
Type(s) of responsibility
  • general
  • technical
Type of institution
non-profit
Institution
Klaus Tschira Stiftung
Additional name(s)
  • KTS
Institution
Country
Germany
Type(s) of responsibility
  • funding
Type of institution
non-profit

Policies (1)

Policy Name
Terms & Conditions

Database access

Type of access to research data repository
open

Database licenses (1)

Database License
Copyrights

Data access (1)

Type of access to data
open

Data licenses (1)

DataLicense
CC

Data upload (1)

Type of data upload
restricted
Data upload restriction type(s)
  • feeRequired
  • registration
Persistent identifier system(s)
  • URN
Name of the repository software
  • unknown
Versioning
yes
Data citation guideline
https://sabiork.h-its.org/sabioRestWebServices/kineticLaws/123
Enhanced Publication
yes
Quality management
yes

Application programming interfaces (1)

Type
REST
Url
https://sabiork.h-its.org/sabioRestWebServices/
documentation
https://sabiork.h-its.org/layouts/content/docuRESTfulWeb/manual.gsp

Remarks

Remarks
Data Export: Reactions with selected kinetic data can be exported in SBML (Systems Biology Markup Language) for exchange with other systems or programs, e.g. allowing its import into simulation and modelling programs supporting SBML like COPASI or CellDesigner. The data is described in SBML together with annotations of entities and expressions to other resources and biological ontologies. These annotations comply with the MIRIAM standard (Minimal Information Requested In the Annotation of biochemical Models). For better tracking the exported SBML also contains SABIO-RK specific identifiers (e.g. for a reaction or a kinetic record) that are compliant with MIRIAM.
Entry date
2014-04-24
Last update
2025-04-22
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Cite this re3data.org record:

re3data.org: SABIO-RK; editing status 2025-04-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R33C9X last accessed: 2025-04-27