Repository details

Gramene

Name of repository
Gramene
Repository URL
https://www.gramene.org/
Subject(s)
Description
Gramene is a platform for comparative genomic analysis of agriculturally important grasses, including maize, rice, sorghum, wheat and barley. Relationships between cereals are queried and displayed using controlled vocabularies (Gene, Plant, Trait, Environment, and Gramene Taxonomy) and web-based displays, including the Genes and Quantitative Trait Loci (QTL) modules.
Contact(s)
Content type(s)
Keyword(s)
Persistent identifier(s) of the repository
Repository size
156.836 gene family trees built from 3.867.457 protein coding genes spanning 110 of the plant genomes
Repository type(s)
  • disciplinary
Mission statement for designated community
https://www.gramene.org/about-gramene
Research data repository language(s)
  • English
Data and/or service provider
  • dataProvider
  • serviceProvider

Institutions (7)

Institution
Cold Spring Harbor Laboratory
Institution
Country
United States
Type(s) of responsibility
  • general
Type of institution
non-profit
Institution
EMBL-EBI
Additional name(s)
  • European Bioinformatics Institute
Institution
Country
United Kingdom
Type(s) of responsibility
  • general
Type of institution
non-profit
Institution
Ensembl
Additional name(s)
  • e!ensembl
Institution
Country
United Kingdom
Type(s) of responsibility
  • technical
Type of institution
non-profit
Institution
Gramene collaborators
Country
United States
Type(s) of responsibility
  • general
Type of institution
non-profit
Institution
National Science Foundation
Additional name(s)
  • NSF
Institution
Country
United States
Type(s) of responsibility
  • funding
Type of institution
non-profit
Institution
Oregon State University, Center for Quantitative Life Sciences
Additional name(s)
  • formerly: Center for Genome Research and Biocomputing
  • formerly: CGRB
Institution
Country
United States
Type(s) of responsibility
  • general
Type of institution
non-profit
Institution
United States Department of Agriculture, Agricultural Research Service
Additional name(s)
  • USDA ARS
Institution
Country
United States
Type(s) of responsibility
  • funding
Type of institution
non-profit

Policies (2)

Policy Name
Gramene Genomes inclusion criteria
Policy Name
EMBL-EBI terms of use

Database access

Type of access to research data repository
open

Data access (1)

Type of access to data
open

Data licenses (2)

DataLicense
Public Domain
DataLicense
Copyrights

Data upload (1)

Type of data upload
restricted
Data upload restriction type(s)
  • registration
Persistent identifier system(s)
  • none
Name of the repository software
  • MySQL
Versioning
yes
Data citation guideline
https://www.gramene.org/cite
Enhanced Publication
yes

Application programming interfaces (2)

Type
REST
Url
https://www.gramene.org/web-services
Type
FTP
Url
ftp://ftp.gramene.org/

Remarks

Entry date
2014-07-17
Last update
2025-03-11
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Cite this re3data.org record:

re3data.org: Gramene; editing status 2025-03-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3GG7M last accessed: 2025-04-18