Repository details
virus mentha
Name of repository
virus mentha
Additional name(s)
- the interactome browser
- VirusMINT
Repository URL
Subject(s)
Description
virus mentha archives evidence about viral interactions collected from different sources and presents these data in a complete and comprehensive way. Its data comes from manually curated protein-protein interaction databases that have adhered to the IMEx consortium. virus mentha is a resource that offers a series of tools to analyse selected proteins in the context of a network of interactions. Protein interaction databases archive protein-protein interaction (PPI) information from published articles. However, no database alone has sufficient literature coverage to offer a complete resource to investigate "the interactome".
virus mentha's approach generates every week a consistent interactome (graph). Most importantly, the procedure assigns to each interaction a reliability score that takes into account all the supporting evidence. virus mentha offers direct access to viral families such as: Orthomyxoviridae, Orthoretrovirinae and Herpesviridae plus, it offers the unique possibility of searching by host organism. The website and the graphical application are designed to make the data stored in virus mentha accessible and analysable to all users.virus mentha superseeds VirusMINT. The Source databases are: MINT, DIP, IntAct, MatrixDB, BioGRID.
Keyword(s)
Persistent identifier(s) of the repository
Repository size
5.828 proteins; 15.967 interactions; 12.765 publications
Repository type(s)
- disciplinary
Mission statement for designated community
Research data repository language(s)
- English
Data and/or service provider
- dataProvider
- serviceProvider
Institutions (5)
Institution
Additional name(s)
- CORDIS FP7
Country
Type(s) of responsibility
- funding
Type of institution
non-profit
Additional name(s)
- Fund for Investment in Basic Research
- FIRB
Country
Type(s) of responsibility
- funding
Type of institution
non-profit
Additional name(s)
- PSI
Country
Type(s) of responsibility
- funding
Type of institution
non-profit
Additional name(s)
- IMEx
Country
Type(s) of responsibility
- general
Type of institution
non-profit
Additional name(s)
- Universita degli Studi di Roma 'Tor Vergata', Dipartimento di Biologia
Country
Type(s) of responsibility
- general
- technical
Type of institution
non-profit
Policies (1)
Policy Name
Database access
Type of access to research data repository
open
Data access (1)
Type of access to data
open
Data licenses (1)
DataLicense
Data upload (1)
Type of data upload
restricted
Data upload restriction type(s)
- other
Data upload license (1)
Data upload license name
Persistent identifier system(s)
- none
Versioning
yes
Data citation guideline
Enhanced Publication
unknown
Quality management
unknown
Application programming interfaces (1)
Remarks
Entry date
2014-04-03
Last update
2024-04-05
Cite this re3data.org record:
re3data.org: virus mentha; editing status 2024-04-05; re3data.org - Registry of Research Data Repositories. https://doi.org/10.17616/R3F890 last accessed: 2025-06-10- Current projects
- EOSC FAIR-IMPACT
-
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.
- Cite this service: re3data.org - Registry of Research Data Repositories. https://doi.org/10.17616/R3D last accessed: 2025-06-10
