Repository details

The Microbial Protein Interaction Database

Name of repository
The Microbial Protein Interaction Database
Additional name(s)
  • MPIDB
Repository URL
http://www.jcvi.org/cms/home/
Subject(s)
Description
<<<!!!<<< as stated 2017-06-09 MPIDB is no longer available under URL http://www.jcvi.org/mpidb/about.php >>>!!!>>> The microbial protein interaction database (MPIDB) aims to collect and provide all known physical microbial interactions. Currently, 24,295 experimentally determined interactions among proteins of 250 bacterial species/strains can be browsed and downloaded. These microbial interactions have been manually curated from the literature or imported from other databases (IntAct, DIP, BIND, MINT) and are linked to 26,578 experimental evidences (PubMed ID, PSI-MI methods). In contrast to these databases, interactions in MPIDB are further supported by 68,346 additional evidences based on interaction conservation, protein complex membership, and 3D domain contacts (iPfam, 3did). We do not include (spoke/matrix) binary interactions infered from pull-down experiments.
Contact(s)
  • administrative: purchasing@jcvi.org
Keyword(s)
Persistent identifier(s) of the repository
Repository size
250 species, 7810 proteins, 24295 interactions, 26578 experiments, 1708 publications
Repository type(s)
  • disciplinary
Research data repository language(s)
  • English
Data and/or service provider
  • dataProvider
  • serviceProvider

Institutions (3)

Institution
HUPO Proteomics Standards Initiative
Additional name(s)
  • PSI
Country
United States
Type(s) of responsibility
  • funding
Type of institution
non-profit
Institution
International Molecular Exchange Consortium
Additional name(s)
  • IMEx
Country
United Kingdom
Type(s) of responsibility
  • general
Type of institution
non-profit
Institution
J. Craig Venter Institute
Additional name(s)
  • JCVI
Country
United States
Type(s) of responsibility
  • general
  • technical
Type of institution
non-profit

Policies (2)

Policy Name
IMEx Curation Rules
Policy Name
JVCI Policy - Promoting Objectivity in Research under Public Health Service Regulations

Database access

Type of access to research data repository
open

Data access (1)

Type of access to data
open

Data licenses (1)

DataLicense
CC

Data upload (1)

Type of data upload
restricted
Data upload restriction type(s)
  • feeRequired

Data upload license (1)

Data upload license name
IMEx data submission
Versioning
yes
Data citation guideline
http://www.jcvi.org/cms/legal/data-disclaimer/

Application programming interfaces (1)

Type
FTP
Url
ftp://ftp.jcvi.org/

Remarks

Remarks
MPIDB is partner of the International Molcular Exchange Consortium (IMEx). The Microbial Protein Interaction Database relies on many fine resources maintained elsewhere: UniProt,Gene Ontology, PDBsum,3DID, iPfam, IntAct,BIND, DIP, MINT, Pfam
Entry date
2014-03-28
Last update
2024-12-11
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Cite this re3data.org record:

re3data.org: The Microbial Protein Interaction Database; editing status 2024-12-11; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3G899 last accessed: 2025-04-26