Repository details

Conserved Domain database

Name of repository
Conserved Domain database
Additional name(s)
  • CDD
  • formerly: Conserved Domains and Protein Classification
Repository URL
https://www.ncbi.nlm.nih.gov/cdd/
Subject(s)
Description
The Conserved Domain Database is a resource for the annotation of functional units in proteins. Its collection of domain models includes a set curated by NCBI, which utilizes 3D structure to provide insights into sequence/structure/function relationships
Contact(s)
Content type(s)
Keyword(s)
Persistent identifier(s) of the repository
Repository size
64.456 total models; 4.705 multi-model Superfamilies
Repository type(s)
  • disciplinary
  • institutional
Mission statement for designated community
https://www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtml
Research data repository language(s)
  • English
Data and/or service provider
  • dataProvider
  • serviceProvider

Institutions (2)

Institution
National Center for Biotechnology Information
Additional name(s)
  • NCBI
Institution
Country
United States
Type(s) of responsibility
  • general
  • technical
Type of institution
non-profit
Institution
National Institutes of Health, National Library of Medicine
Additional name(s)
  • NIH NLM
Institution
Country
United States
Type(s) of responsibility
  • funding
Type of institution
non-profit

Policies (1)

Policy Name
NCBI Website and Data Usage Policies and Disclaimers

Database access

Type of access to research data repository
open

Data access (1)

Type of access to data
open

Data licenses (3)

DataLicense
Copyrights
DataLicense
Public Domain
DataLicense
other

Data upload (1)

Type of data upload
closed
Persistent identifier system(s)
  • none
Name of the repository software
  • unknown
Versioning
yes
Data citation guideline
https://www.ncbi.nlm.nih.gov/Structure/cdd/cdd_help.shtml#CitingCDD
Enhanced Publication
yes
Quality management
yes

Application programming interfaces (2)

Type
FTP
Url
ftp://ftp.ncbi.nih.gov/pub/mmdb/cdd/
Type
other
Url
https://www.ncbi.nlm.nih.gov/Structure/cdd/cdd_help.shtml#BatchRPSBWebAPI

Remarks

Remarks
the Conserved Domain Database is part of the NCBI Structure Group: Data ingest from following source databases: NCBI CDD, Simple Modular Architecture Research Tool (SMART), PFAM, COGs, Protein Clusters (PRK), TIGRFAMs
Entry date
2014-03-26
Last update
2025-01-10
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Cite this re3data.org record:

re3data.org: Conserved Domain database; editing status 2025-01-10; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3SP63 last accessed: 2025-04-26