Repository details

cisRED

⚠ Caution: This entry is annotated as "Offline: 2023-11-21". If you believe this is incorrect, please submit a change request.
Name of repository
cisRED
Additional name(s)
  • Databases of genome-wide regulatory module and element predictions
  • cis - Regulatory element database
Repository URL
http://www.cisred.org/
Subject(s)
Description
<<<!!!<<< This repository is no longer available. >>>!!!>>>
Contact(s)
  • administrative: cisred@bcgsc.ca
Keyword(s)
Persistent identifier(s) of the repository
Repository type(s)
  • disciplinary
Research data repository language(s)
  • English
Data and/or service provider
  • dataProvider

Dates

Started
2007
Offline
2023-11-21

Institutions (4)

Institution name
BC Cancer Agency, Research Centre, Canada's Michael Smith Genome Sciences Centre
Additional name(s)
  • BCGSC
Country
Canada
Type(s) of responsibility
  • general
  • technical
Type of institution
non-profit
Institution name
BC Cancer Foundation
Country
Canada
Type(s) of responsibility
  • funding
Type of institution
non-profit
Institution name
Genome Canada
Country
Canada
Type(s) of responsibility
  • funding
Type of institution
non-profit
Institution name
Michael Smith Foundation for Health Research
Additional name(s)
  • MSFHR
Country
Canada
Type(s) of responsibility
  • funding
Type of institution
non-profit

Policies (1)

Policy name
Data Release Policy: Open Access

Database access

Type of access to research data repository
open

Data access (1)

Type of access to data
open

Data licenses (2)

Data license
other
Data license
CC

Data upload (1)

Type of data upload
closed
Persistent identifier system(s)
  • none
Name of the repository software
  • MySQL
Data citation guideline
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1347438/citedby/

Remarks

Remarks
Description: "The cisRED database holds conserved sequence motifs identified by genome scale motif discovery, similarity, clustering, co-occurrence and coexpression calculations. Sequence inputs include low-coverage genome sequence data and ENCODE data. A Nucleic Acids Research article describes the system architecture"
Entry date
2014-02-20
Last update
2026-06-17
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Cite this re3data.org record:

re3data.org: cisRED; editing status 2026-06-17; re3data.org - Registry of Research Data Repositories. https://doi.org/10.17616/R3XK69 last accessed: 2026-06-18