Repository details

caArray

⚠ Caution: This entry is annotated as "Closed: 2015-03-31". If you believe this is incorrect, please submit a change request.
Name of repository
caArray
Additional name(s)
  • Array Data Management System
Repository URL
https://wiki.nci.nih.gov/display/caArray2/caArray+Retirement+Announcement
Subject(s)
Description
The National Cancer Institute (NCI) Center for Biomedical Informatics and Information Technology (CBIIT) instance of the caArray database was retired on March 31st, 2015. All publicly-accessible caArray data and annotations will be archived and will remain available via FTP download https://wiki.nci.nih.gov/x/UYHeDQ and is also available at GEO http://www.ncbi.nlm.nih.gov/geo/ . >>>!!!<<< While NCI will not be able to provide technical support for the caArray software after the retirement, the source code is available on GitHub https://github.com/NCIP/caarray , and we encourage continued community development. Molecular Analysis of Brain Neoplasia (Rembrandt fine-00037) gene expression data has been loaded into ArrayExpress: http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-3073 >>>!!!<<< caArray is an open-source, web and programmatically accessible microarray data management system that supports the annotation of microarray data using MAGE-TAB and web-based forms. Data and annotations may be kept private to the owner, shared with user-defined collaboration groups, or made public. The NCI instance of caArray hosts many cancer-related public datasets available for download.
Contact(s)
  • administrative: ncicbiit@mail.nih.gov
Content type(s)
Keyword(s)
Persistent identifier(s) of the repository
Repository type(s)
  • disciplinary
  • institutional
Research data repository language(s)
  • English
Data and/or service provider
  • dataProvider

Dates

Started
2008
Closed
2015-03-31

Institutions (2)

Institution name
U.S. Department of Health and Human Services, National Institutes of Health, National Cancer Institute
Additional name(s)
  • NCI
Country
United States
Type(s) of responsibility
  • general
Type of institution
non-profit
Institution name
U.S. Department of Health and Human Services, National Institutes of Health, National Cancer Institute, Center for Biomedical Informatics and Information Technology
Additional name(s)
  • CBIIT
Country
United States
Type(s) of responsibility
  • technical
Type of institution
non-profit

Database access

Type of access to research data repository
open

Database licenses (1)

Database license
BSD

Data access (3)

Type of access to data
open
Type of access to data
restricted
Data access restriction type(s)
  • registration
Type of access to data
closed

Data licenses (1)

Data license
other

Data upload (1)

Type of data upload
restricted
Data upload restriction type(s)
  • registration
Versioning
yes

Application programming interfaces (1)

Type
other
Url
https://wiki.nci.nih.gov/display/caArray2doc/caArray+Legacy+API+v2.3+Reference

Remarks

Remarks
caArray is covered by Thomson Reuters Data Citation Index.
Entry date
2013-12-17
Last update
2026-04-23
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Cite this re3data.org record:

re3data.org: caArray; editing status 2026-04-23; re3data.org - Registry of Research Data Repositories. https://doi.org/10.17616/R33G76 last accessed: 2026-06-24