Repository details

Greengenes

Name of repository
Greengenes
Additional name(s)
  • The Greengenes Database
Repository URL
https://greengenes.secondgenome.com/
Subject(s)
Description
Greengenes is an Earth Sciences website that assists clinical and environmental microbiologists from around the globe in classifying microorganisms from their local environments. A 16S rRNA gene database addresses limitations of public repositories by providing chimera screening, standard alignment, and taxonomic classification using multiple published taxonomies.
Content type(s)
Keyword(s)
Persistent identifier(s) of the repository
  • RRID:nif-0000-02927
  • RRID:SCR_002830
  • MIR:00000165
  • FAIRsharing_doi:10.25504/FAIRsharing.bpxgb6
Repository type(s)
  • disciplinary
Research data repository language(s)
  • English
Data and/or service provider
  • data provider
  • service provider
Institution name
Lawrence Berkeley National Laboratory
Additional name(s)
  • LBNL
  • Berkeley Lab
Identifier(s)
  • RRID:SCR_011336
  • RRID:nlx_37075
  • ROR:02jbv0t02
Contact(s)
Country
United States
Type(s) of responsibility
  • general
  • funding
Type of institution
non-profit
Institution name
Lawrence Livermore National Laboratory
Additional name(s)
  • LLNL
Identifier(s)
  • RRID:SCR_011337
  • RRID:nlx_151761
  • ROR:041nk4h53
Contact(s)
Country
United States
Type(s) of responsibility
  • general
  • funding
Type of institution
non-profit
Institution name
Second Genome, Inc.
Additional name(s)
  • The Microbiome Company
Identifier(s)
  • ROR:03mnpq162
Contact(s)
  • partnering@secondgenome.com
Country
United States
Type(s) of responsibility
  • general
  • technical
Type of institution
non-profit
Institution name
University of Califonia, Knight Lab
Additional name(s)
  • KNIGHTLAB
Contact(s)
Country
United States
Type(s) of responsibility
  • general
  • technical
Type of institution
non-profit
Institution name
University of Queensland, Australian Centre for Ecogenomics
Additional name(s)
  • ACE
Contact(s)
Country
Australia
Type(s) of responsibility
  • general
  • technical
Type of institution
non-profit

Database access

Type of access to research data repository
open

Database licenses (1)

Database License
CC

Data access (1)

Type of access to data
open

Data licenses (1)

DataLicense
CC

Data upload (1)

Type of data upload
closed
Persistent identifier system(s)
  • none
Name of the repository software
  • unknown
Versioning
yes
Enhanced Publication
unknown
Quality management
yes

Application programming interfaces (1)

API type
FTP

Remarks

Remarks
Greengenes is covered by Thomson Reuters Data Citation Index.
Entry date
2013-11-27
Last update
2021-12-15
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Cite this re3data.org record:

re3data.org: Greengenes; editing status 2021-12-15; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R36C8G last accessed: 2023-12-07