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Found 426 result(s)

GenBase

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GenBase is a genetic sequence database that accepts user submissions (mRNA, genomic DNAs, ncRNA, or small genomes such as organelles, viruses, plasmids, phages from any organism) and integrates data from INSDC.

DANS Data Station Life Sciences

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A domain-specific repository for the Life Sciences, covering the health, medical as well as the green life sciences. The repository services are primarily aimed at the Netherlands, but not exclusively.

NCBI Datasets

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NCBI Datasets is a continually evolving platform designed to provide easy and intuitive access to NCBI’s sequence data and metadata. NCBI Datasets is part of the NIH Comparative Genomics Resource (CGR). CGR facilitates reliable comparative genomics analyses for all eukaryotic organisms through an NCBI Toolkit and community collaboration.

PlutoF

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An online data management workbench and computing service provider for biology and related disciplines.

University of Warsaw Research Data Repository

Dane Badawcze Uniwersytetu Warszawskiego. Repozytorium

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University of Warsaw Research Data Repository aims to collect, archive, preserve and make available all types of research data. Storing and making data available is possible for users affiliated with the University of Warsaw, Poland, or those involved in projects carried out in partnership with the University of Warsaw. Browsing and downloading publicly available research data is open to all interested.

Gene Ontology

GO

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The mission of the GO Consortium is to develop a comprehensive, computational model of biological systems, ranging from the molecular to the organism level, across the multiplicity of species in the tree of life. The Gene Ontology (GO) knowledgebase is the world’s largest source of information on the functions of genes. This knowledge is both human-readable and machine-readable, and is a foundation for computational analysis of large-scale molecular biology and genetics experiments in biomedical research.

BIH / Charité Virtual Research Environment

Berlin Institute of Health / Charité Virtual Research Environment

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The Virtual Research Environment (VRE) is an open-source data management platform that enables medical researchers to store, process and share data in compliance with the European Union (EU) General Data Protection Regulation (GDPR). The VRE addresses the present lack of digital research data infrastructures fulfilling the need for (a) data protection for sensitive data, (b) capability to process complex data such as radiologic imaging, (c) flexibility for creating own processing workflows, (d) access to high performance computing. The platform promotes FAIR data principles and reduces barriers to biomedical research and innovation. The VRE offers a web portal with graphical and command-line interfaces, segregated data zones and organizational measures for lawful data onboarding, isolated computing environments where large teams can collaboratively process sensitive data privately, analytics workbench tools for processing, analyzing, and visualizing large datasets, automated ingestion of hospital data sources, project-specific data warehouses for structured storage and retrieval, graph databases to capture and query ontology-based metadata, provenance tracking, version control, and support for automated data extraction and indexing. The VRE is based on a modular and extendable state-of-the art cloud computing framework, a RESTful API, open developer meetings, hackathons, and comprehensive documentation for users, developers, and administrators. The VRE with its concerted technical and organizational measures can be adopted by other research communities and thus facilitates the development of a co-evolving interoperable platform ecosystem with an active research community.

San Raffaele Open Research Data Repository

ORDR

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San Raffaele Open Research Data Repository (ORDR) is an institutional platform which allows to safely store, preserve and share research data. ORDR is endowed with the essential characteristics of trusted repositories, as it ensures: a) open or restricted access to contents, with persistent unique identifiers to enable referencing and citation; b) a comprehensive set of Metadata fields to enable discovery and reuse; c) provisions to safeguard integrity, authenticity and long-term preservation of deposited data.

Repositori de la Universitat Jaume I

Repositori UJI

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It's a multidisciplinary repository that collect and diseminate research, academic, institutional and learning results from Universitat Jaume I. It also includes digitised documentary material on the province of Castelló and other information resources from different institutions, like Spain-European Union Digital Archive (SEDAS).

eLibrary of Microbial Systematics and Genomics

eLMSG

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eLMSG (eLibrary of Microbial Systematics and Genomics) is a web microbial library that integrates not only taxonomic information, but also genomic information and phenotypic information (including morphology, physiology, biochemistry and enzymology). The taxonomic system of eLMSG is manually curated and composed of all validly and some effectively published taxa. For each taxon, the Latin name, taxon ID (NCBI taxonomy), etymology, rank, lineage, the dates of effective and/or valid publication, feature descriptions, nomenclature type and references for the proposal and emendations during the history of the taxon are presented. Besides these data, the species taxa contain information about 16S rRNA gene and/or genome sequences. All publicly available genome data of each type species including both type and non-type strains were collected, and if needed, re-annotated using the standardized analysis pipeline. Furthermore, pan-genomic data analyses were conducted for species with ≥5 genome sequences available. Finally, for all type species, taxonomically relevant phenotypic data were extracted and curated from literatures, which were further indexed into eLMSG as searchable and analyzable data records. Taken together, eLMSG is a comprehensive web platform for studying mi- crobial systematics and genomics, potentially useful for better understanding microbial taxonomy, natural evolutionary processes and ecological relationships.

Netherlands Polar Data Center

NPDC

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The Netherlands Polar Data Center (NPDC) is part of the Netherlands Polar Program (NPP). NPDC archives and provides access to the data of Polar Research by researchers funded by Dutch Research Council (NWO) or otherwise carried out by researchers from Dutch universities and research institutions. The repository provides: 1) An overview of current and completed projects from the Netherlands Polar Programme (NPP) and other Dutch projects in the Polar Regions; 2) Access to the data of research carried out by Dutch researchers in the Polar Regions; and, 3) Links to external sources of Polar research data. For more information about the NPDC and the services it may offer to the Dutch Polar research community see https://npdc.nl/npdc.

bio.tools

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bio.tools is a software registry for bioinformatics and the life sciences.

SciELO Data

Scientific Electronic Library Online Data

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SciELO Data is a multidisciplinary repository for deposition, preservation and dissemination of research data from articles submitted and approved for publication, already published in SciELO Network journals or deposited in SciELO Preprints.

German Central Health Study Hub

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The German Central Health Study Hub is a platform that serves two different kinds of users. First, it allows scientists and data holding organizations (data producers) to publish their project characteristics, documents and data related to their research endeavour in a FAIR manner. Obviously, patient-level data cannot be shared publicly, however, metadata describing the patient-level data along with information about data access can be shared via the platform (preservation description information). The other kind of user is a scientist or researcher (data consumer) that likes to find information about past and ongoing studies and is interested in reusing existing patient-level data for their project. To summarize, the platforms connect data providers with data consumers in the domain of clinical, public health and epidemiologic health research to foster reuse. The platform aggregates and harmonizes information already entered in various public repositories such as DRKS, clinicaltrials.gov, WHO ICTRP to provide a holistic view of the German research landscape in the aforementioned research areas. In addition, data stewards actively collect available information from (public) resources such as websites that cannot be automatically integrated. The service started during the COVID-19 pandemic.

Polish Platform of Medical Research

Polska Platforma Medyczna

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Polish Platform of Medical Research (PPM) is a digital platform presenting the scientific achievements and research potential of 8 Polish medical universities from Bialystok, Gdansk, Katowice, Lublin, Szczecin, Warsaw, Wroclaw, the Nofer Institute of Occupational Medicine in Lodz and the Jagiellonian University Medical College in Cracow that form a partnership for the PPM Project. It incorporates the features of a Current Research Information System and a consortium repository and uses OMEGA-PSIR software. It provides open access to full texts of publications, doctoral theses, research data and other documents. PPM is a central platform that aggregates data from the local platforms of the PPM Project Partners. PPM is accessible for any Internet user.

ASU Library Research Data Repository

Arizona State University Dataverse

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The Arizona State University (ASU) Research Data Repository provides a platform for ASU-affiliated researchers to share, preserve, cite, and make research data accessible and discoverable. The ASU Research Data Repository provides a permanent digital identifier for research data, which complies with data sharing policies. The repository is powered by the Dataverse open-source application, developed and used by Harvard University. Both the ASU Research Data Repository and the KEEP Institutional Repository are managed by the ASU Library to ensure research produced at Arizona State University is discoverable and accessible to the global community.

Canadian Open Neuroscience Platform Portal

CONP

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The CONP portal is a web interface for the Canadian Open Neuroscience Platform (CONP) to facilitate open science in the neuroscience community. CONP simplifies global researcher access and sharing of datasets and tools. The portal internalizes the cycle of a typical research project: starting with data acquisition, followed by processing using already existing/published tools, and ultimately publication of the obtained results including a link to the original dataset. From more information on CONP, please visit https://conp.ca

UBC Dataverse Collection

formerly name: University of British Columbia Dataverse Collection

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UBC Dataverse Collection is a free research data repository for our faculty, students and staff. The platform makes it possible for researchers to deposit data, create appropriate metadata, obtain DOIs for permanent links, and maintain version control of their datasets. All files are held in a secure environment on Canadian servers. Researchers are encouraged to make their data available publicly, but can choose to restrict access to their data if they wish.

Aperta TÜBİTAK Open Archive

Aperta - TÜBİTAK Açık Arşivi

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Aperta is the open access repository of The Scientific and Technological Research Council of Turkey (TÜBİTAK). The publications produced from the projects supported by TUBITAK must be uploaded to TUBITAK Open Archive Aperta. It is recommended that the research data of these publications should be open access.

Bicocca Open Archive Research Data

BOARD

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BOARD (Bicocca Open Archive Research Data) is the institutional data repository of the University of Milano-Bicocca. BOARD is an open, free-to-use research data repository, which enables members of University of Milano-Bicocca to make their research data publicly available. By depositing their research data in BOARD researchers can: - Make their research data citable - Share their data privately or publicly - Ensure long-term storage for their data - Keep access to all versions - Link their article to their data

Yareta

The Research Data Repository of Geneva's Higher Education Institutions

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Yareta is a repository service built on digital solutions for archiving, preserving and sharing research data that enable researchers and institutions of any disciplines to share and showcase their research results. The solution was developed as part of a larger project focusing on Data Life Cycle Management (dlcm.ch) that aims to develop various services for research data management. Thanks to its highly modular architecture, Yareta can be adapted both to small institutions that need a "turnkey" solution and to larger ones that can rely on Yareta to complement what they have already implemented. Yareta is compatible with all formats in use in the different scientific disciplines and is based on modern technology that interconnects with researchers' environments (such as Electronic Laboratory Notebooks or Laboratory Information Management Systems).

Most Wiedzy Open Research Data Catalog

Most Wiedzy Katalog Danych Badawczych

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The nature of the ‘Bridge of Data’ project is to design and build a platform that allows collecting, searching, analyzing and sharing open research data and to provide it with unique data collected from the three most important Pomeranian universities: Gdańsk University of Technology, Medical University of Gdańsk and the University of Gdańsk. These data will be made available free of charge to the scientific community, entrepreneurs and the public. A bridge will be built to allow reuse of Open Research Data. The available research data will be described by standards developed by dedicated, experienced scientific teams. The metadata will allow other external computer systems to interpret the collected data. ORD descriptions will also include data reuse or reduction scenarios to facilitate further processing.

Bilkent University Institutional Repository

BUIR

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This site provides access to the research output of the institution. The interface is available in English. Users may set up email or RSS feeds to be alerted to new content.

FHSTP Phaidra

Phaidra

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Phaidra is the Institutional Repository and Digital Asset Management System of the St. Pölten University of Applied Sciences. The researchers and students at the University can use it to secure and archive their digital objects such as data, Open Access Publications and dissertations long-term as well as make them widely available to the public. Phaidra provides access to the objects using metadata in English and German. The Repository plays an important part in knowledge transfer in Austria and worldwide.

WikiPathways

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WikiPathways was established to facilitate the contribution and maintenance of pathway information by the biology community. WikiPathways is an open, collaborative platform dedicated to the curation of biological pathways. WikiPathways thus presents a new model for pathway databases that enhances and complements ongoing efforts, such as KEGG, Reactome and Pathway Commons. Building on the same MediaWiki software that powers Wikipedia, we added a custom graphical pathway editing tool and integrated databases covering major gene, protein, and small-molecule systems. The familiar web-based format of WikiPathways greatly reduces the barrier to participate in pathway curation. More importantly, the open, public approach of WikiPathways allows for broader participation by the entire community, ranging from students to senior experts in each field. This approach also shifts the bulk of peer review, editorial curation, and maintenance to the community.