Repository details
eLibrary of Microbial Systematics and Genomics
Name of repository
eLibrary of Microbial Systematics and Genomics
Additional name(s)
- eLMSG
Repository URL
Subject(s)
Description
eLMSG (eLibrary of Microbial Systematics and Genomics) is a web microbial library that integrates not only taxonomic information, but also genomic information and phenotypic information (including morphology, physiology, biochemistry and enzymology). The taxonomic system of eLMSG is manually curated and composed of all validly and some effectively published taxa. For each taxon, the Latin name, taxon ID (NCBI taxonomy), etymology, rank, lineage, the dates of effective and/or valid publication, feature descriptions, nomenclature type and references for the proposal and emendations during the history of the taxon are presented. Besides these data, the species taxa contain information about 16S rRNA gene and/or genome sequences. All publicly available genome data of each type species including both type and non-type strains were collected, and if needed, re-annotated using the standardized analysis pipeline. Furthermore, pan-genomic data analyses were conducted for species with ≥5 genome sequences available. Finally, for all type species, taxonomically relevant phenotypic data were extracted and curated from literatures, which were further indexed into eLMSG as searchable and analyzable data records. Taken together, eLMSG is a comprehensive web platform for studying mi- crobial systematics and genomics, potentially useful for better understanding microbial taxonomy, natural evolutionary processes and ecological relationships.
Contact
- elmsg-support@picb.ac.cn
Keyword(s)
Persistent identifier(s) of the repository
- FAIRsharing_doi:10.25504/FAIRsharing.3254c6
Repository type(s)
- institutional
- disciplinary
Mission statement for designated community
Research data repository language(s)
- English
Data and/or service provider
- data provider
Institution name
Additional name(s)
- BMDC
Country
Type(s) of responsibility
- general
- technical
Type of institution
non-profit
Institution name
Additional name(s)
- CAS
- 中国科学院
Identifier(s)
- ROR:034t30j35
Country
Type(s) of responsibility
- funding
Type of institution
non-profit
Additional name(s)
- SINH
- 中国科学院 上海营养与健康研究院
Identifier(s)
- ROR:00rytkh49
Country
Type(s) of responsibility
- funding
- general
Type of institution
non-profit
Policies (1)
Policy Name
Database access
Type of access to research data repository
open
Data access (1)
Type of access to data
open
Data licenses (1)
DataLicense
Data upload (1)
Type of data upload
closed
Enhanced Publication
yes
Quality management
yes
Remarks
Remarks
The eLMSG system is a part of The National Omics Data Encyclopedia (NODE) https://www.biosino.org/node/.
Further databases of Bio-Med Big Data Center: https://www.biosino.org/bmdc/
Entry date
2022-03-19
Last update
2022-03-24
Cite this re3data.org record:
re3data.org: eLibrary of Microbial Systematics and Genomics; editing status 2022-03-24; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJN4V last accessed: 2024-04-27- Current projects
- EOSC FAIR-IMPACT
- re3data COREF
-
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has waived all copyright and related or neighboring rights to
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Except where otherwise noted, content on this site is licensed under a
Creative Commons Attribution 4.0 International License
.
- Cite this service: re3data.org - Registry of Research Data Repositories. https://doi.org/10.17616/R3D last accessed: 2024-04-27
