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Found 169 result(s)

XNAT CENTRAL

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XNAT CENTRAL is a publicly accessible datasharing portal at Washinton University Medical School using XNAT software. XNAT provides neuroimaging data through a web interface and a customizable open source platform. XNAT facilitates data uploads and downloads for data sharing, processing and organization. NOTICE: Central XNAT will be decommissioned on October 15, 2023. New project creation is no longer permitted.

BioDare2

Biological Data Repository

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BeiDare2 is currently at beta version. All new users should try the new service as we no longer provide training for the classic BioDare. - BioDare stands for Biological Data Repository, its main focus is data from circadian experiments. BioDare is an online facility to share, store, analyse and disseminate timeseries data, focussing on circadian clock data, with browser and web service interfaces. Toolbox features include an improved, speedier FFT-NLLs routine and ROBuST’s Spectrum Resampling tool that will analyse rhythmic time series data.

PlutoF

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An online data management workbench and computing service provider for biology and related disciplines.

LIPID MAPS

LIPID Metabolites And Pathways Strategy

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Tthe Lipidomics Gateway - a free, comprehensive website for researchers interested in lipid biology, provided by the LIPID MAPS (Lipid Metabolites and Pathways Strategy) Consortium. The LIPID MAPS Lipidomics Gateway provides a rich collection of information and resources to help you stay abreast of the latest developments in this rapidly expanding field. LIPID Metabolites And Pathways Strategy (LIPID MAPS®) is a multi-institutional effort created in 2003 to identify and quantitate, using a systems biology approach and sophisticated mass spectrometers, all of the major — and many minor — lipid species in mammalian cells, as well as to quantitate the changes in these species in response to perturbation. The ultimate goal of our research is to better understand lipid metabolism and the active role lipids play in diabetes, stroke, cancer, arthritis, Alzheimer's and other lipid-based diseases in order to facilitate development of more effective treatments. Since our inception, we have made great strides toward defining the "lipidome" (an inventory of the thousands of individual lipid molecular species) in the mouse macrophage. We have also worked to make lipid analysis easier and more accessible for the broader scientific community and to advance a robust research infrastructure for the international research community. We share new lipidomics findings and methods, hold annual meetings open to all interested investigators, and are exploring joint efforts to extend the use of these powerful new methods to new applications

Data.gov

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Data.gov increases the ability of the public to easily find, download, and use datasets that are generated and held by the Federal Government. Data.gov provides descriptions of the Federal datasets (metadata), information about how to access the datasets, and tools that leverage government datasets

InterPro

protein sequence analysis & classification

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InterPro collects information about protein sequence analysis and classification, providing access to a database of predictive protein signatures used for the classification and automatic annotation of proteins and genomes. Sequences in InterPro are classified at superfamily, family, and subfamily. InterPro predicts the occurrence of functional domains, repeats, and important sites, and adds in-depth annotation such as GO terms to the protein signatures.

SPARC Portal

Stimulating Peripheral Activity to Relieve Conditions

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The overall vision for the SPARC Portal is to accelerate autonomic neuroscience research and device development by providing access to digital resources that can be shared, cited, visualized, computed, and used for virtual experimentation.

domino

domaine peptide interactions

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<<<!!!<<< This repository is no longer available. 2019-02-19 >>>!!!>>>

CIMMYT Research Data & Software Repository Network

Centro Internacional de Mejoramiento de Maíz y Trigo

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The International Maize and Wheat Improvement Center (CIMMYT) provides a free, open access repository of research software, studies, and datasets produced and developed by CIMMYT scientists as well as the results of the Seeds of Discovery project, which makes available genetic profiles of wheat and maize, two of mankind's three major cereal crops.

Pathway Commons

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Pathway Commons is a convenient point of access to biological pathway information collected from public pathway databases. Information is sourced from public pathway databases and is readily searched, visualized, and downloaded. The data is freely available under the license terms of each contributing database.

NF Data Portal

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The NF Data Portal is designed to help openly explore and share NF datasets, analysis tools, resources, and publications related to neurofibromatosis. Anyone can join the NF Open Science Initiative (NF-OSI) to participate! We welcome contributions from anyone in the neurofibromatosis and schwannomatosis research community, such as original datasets generated by the community or analyses of data from the NF Data Portal.

Network Repository

Network Data Repository, Graph Data, Social Networks

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Network Repository is the first interactive data repository for graph and network data. It hosts graph and network datasets, containing hundreds of real-world networks and benchmark datasets. Unlike other data repositories, Network Repository provides interactive analysis and visualization capabilities to allow researchers to explore, compare, and investigate graph data in real-time on the web.

PRoteomics IDEntifications Database

PRIDE

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The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository for proteomics data, including protein and peptide identifications, post-translational modifications and supporting spectral evidence. PRIDE encourages and welcomes direct user submissions of mass spectrometry data to be published in peer-reviewed publications.

Dash

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<<<!!!<<< Stated 2019-10-30: Dash is no longer available. Researchers are advised to store their research data at Dryad https://www.re3data.org/repository/r3d100000044 >>>!!!>>> Dash is an open data publication platform for upload, access, and re-use of research data. Submissions to Dash may be from researchers at participating UC campuses, researchers in earth science and ecology (DataONE), and researchers submitting to the UC Press journals Elementa and Collabra. Self-service depositing of research data through Dash fulfills publisher, funder, and data management plan requirements regarding data sharing and preservation. When researchers publish their datasets through Dash, their datasets are issued a DOI (DataCite) to optimize citability, and are publicly available for download and re-use under a CC BY 4.0 or CC-0 license. Deposited data are preserved in Merritt, California Digital Library’s preservation repository.

California Digital Library

CDL

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California Digital Library (CDL) seeks to be a catalyst for deeply collaborative solutions providing a rich, intuitive and seamless environment for publishing, sharing and preserving our scholars’ increasingly diverse outputs, as well as for acquiring and accessing information critical to the University of California’s scholarly enterprise. University of California Curation Center (UC3) is the digital curation program within CDL. The mission of UC3 is to provide transformative preservation, curation, and research data management systems, services, and initiatives that sustain and promote open scholarship.

Kyoto Encyclopedia of Genes and Genomes

KEGG

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KEGG is a database resource for understanding high-level functions and utilities of the biological system, such as the cell, the organism and the ecosystem, from molecular-level information, especially large-scale molecular datasets generated by genome sequencing and other high-throughput experimental technologies

NSF Arctic Data Center

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The Arctic Data Center is the primary data and software repository for the Arctic section of NSF Polar Programs. The Center helps the research community to reproducibly preserve and discover all products of NSF-funded research in the Arctic, including data, metadata, software, documents, and provenance that links these together. The repository is open to contributions from NSF Arctic investigators, and data are released under an open license (CC-BY, CC0, depending on the choice of the contributor). All science, engineering, and education research supported by the NSF Arctic research program are included, such as Natural Sciences (Geoscience, Earth Science, Oceanography, Ecology, Atmospheric Science, Biology, etc.) and Social Sciences (Archeology, Anthropology, Social Science, etc.). Key to the initiative is the partnership between NCEAS at UC Santa Barbara, DataONE, and NOAA’s NCEI, each of which bring critical capabilities to the Center. Infrastructure from the successful NSF-sponsored DataONE federation of data repositories enables data replication to NCEI, providing both offsite and institutional diversity that are critical to long term preservation.

BioSimulators

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BioSimulators is a registry of containerized biosimulation tools that provide consistent command-line interfaces. The BioSimulations web application helps investigators browse this registry to find simulation tools that have the capabilities (supported modeling frameworks, simulation algorithms, and modeling formats) needed for specific modeling projects.

BioCyc Genome Database Collection

formerly: BioCyc Database Collection

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The BioCyc database collection of Pathway/Genome Databases (PGDBs) provides a reference on the genomes and metabolic pathways of thousands of sequenced organisms. BioCyc PGDBs are generated by software that predict the metabolic pathways of completely sequenced organisms, predict which genes code for missing enzymes in metabolic pathways, and predict operons. BioCyc also integrates information from other bioinformatics databases, such as protein feature and Gene Ontology information from UniProt. The BioCyc website provides a suite of software tools for database searching and visualization, for omics data analysis, and for comparative genomics and comparative pathway questions. From 2016 on, access to the EcoCyc and MetaCyc databases will remain free. Subscriptions to the other 7,600 BioCyc databases will be available to institutions (e.g., libraries), and to individuals. Access to licensed databases via: https://biocyc.org/Product-summary.shtml.