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Found 9 result(s)

Ontology Lookup Service

OLS

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The Ontology Lookup Service (OLS) is a repository for biomedical ontologies that aims to provide a single point of access to the latest ontology versions. The user can browse the ontologies through the website as well as programmatically via the OLS API. The OLS provides a web service interface to query multiple ontologies from a single location with a unified output format.The OLS can integrate any ontology available in the Open Biomedical Ontology (OBO) format. The OLS is an open source project hosted on Google Code.

NanoCommons Knowledge Base

NanoSolveIT Knowledge Base

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The NanoTox Knowlege Base provides access to Nanomaterials, their physico-chemical characterisations, toxicological assays and environmental data as well as computational model based descriptors.

Biosamples

Biosample Database at EBI

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BioSamples stores and supplies descriptions and metadata about biological samples used in research and development by academia and industry. Samples are either 'reference' samples (e.g. from 1000 Genomes, HipSci, FAANG) or have been used in an assay database such as the European Nucleotide Archive (ENA) or ArrayExpress.

European Data Portal

EDP

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The European Data Portal harvests the metadata of Public Sector Information available on public data portals across European countries. Information regarding the provision of data and the benefits of re-using data is also included.

CATH

CATH-Gene3D

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The CATH database is a hierarchical domain classification of protein structures in the Protein Data Bank. Protein structures are classified using a combination of automated and manual procedures. There are four major levels in the CATH hierarchy; Class, Architecture, Topology and Homologous superfamily.

Polish Platform of Medical Research

Polska Platforma Medyczna

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Polish Platform of Medical Research (PPM) is a digital platform presenting the scientific achievements and research potential of 8 Polish medical universities from Bialystok, Gdansk, Katowice, Lublin, Szczecin, Warsaw, Wroclaw, the Nofer Institute of Occupational Medicine in Lodz and the Jagiellonian University Medical College in Cracow that form a partnership for the PPM Project. It incorporates the features of a Current Research Information System and a consortium repository and uses OMEGA-PSIR software. It provides open access to full texts of publications, doctoral theses, research data and other documents. PPM is a central platform that aggregates data from the local platforms of the PPM Project Partners. PPM is accessible for any Internet user.

virus mentha

the interactome browser

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virus mentha archives evidence about viral interactions collected from different sources and presents these data in a complete and comprehensive way. Its data comes from manually curated protein-protein interaction databases that have adhered to the IMEx consortium. virus mentha is a resource that offers a series of tools to analyse selected proteins in the context of a network of interactions. Protein interaction databases archive protein-protein interaction (PPI) information from published articles. However, no database alone has sufficient literature coverage to offer a complete resource to investigate "the interactome". virus mentha's approach generates every week a consistent interactome (graph). Most importantly, the procedure assigns to each interaction a reliability score that takes into account all the supporting evidence. virus mentha offers direct access to viral families such as: Orthomyxoviridae, Orthoretrovirinae and Herpesviridae plus, it offers the unique possibility of searching by host organism. The website and the graphical application are designed to make the data stored in virus mentha accessible and analysable to all users.virus mentha superseeds VirusMINT. The Source databases are: MINT, DIP, IntAct, MatrixDB, BioGRID.

B2SAFE

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B2SAFE is a robust, safe and highly available service which allows community and departmental repositories to implement data management policies on their research data across multiple administrative domains in a trustworthy manner. A solution to: provide an abstraction layer which virtualizes large-scale data resources, guard against data loss in long-term archiving and preservation, optimize access for users from different regions, bring data closer to powerful computers for compute-intensive analysis

HELIX DATA

Αποθετήριο Δεδομένων "HELIX"

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HELIX DATA is an integral component of the Hellenic Data Service "HELIX" supporting knowledge management and scholarly communication in Greece. HELIX DATA is the data catalogue and repository, with a dual role to store and preserve data that are self-deposited by researchers as well as to harvest data records from other national data sources and catalogues.