Repository details
MorpheusML model repository
Name of repository
MorpheusML model repository
Additional name(s)
- Morpheus model repository
Repository URL
Subject(s)
Description
The public MorpheusML model repository collects, curates, documents and tests computational models for multi-scale and multicellular biological systems. Model must be encoded in the model description language MorpheusML. Subsections of the repository distinguish published models from contributed non-published and example models. New models are simulated in Morpheus or Artistoo independently from the authors and results are compared to published results. Successful reproduction is documented on the model's webpage. Models in this repository are included into the CI and test pipelines for each release of the model simulator Morpheus to check and guarantee reproducibility of results across future simulator updates. The model’s webpage provides a History-link to all past model versions and edits that are automatically tracked via Git. Each model is registered with a unique and persistent ID of the format M..... The model description page (incl. the biological context and key results of that model), the model’s XML file, the associated paper, and all further files (often simulation result videos) connected with that model can be retrieved via a persistent URL of the format https://identifiers.org/morpheus/M.....
- for technical details on the citable ModelID please see https://registry.identifiers.org/registry/morpheus
- for the model definition standard MorpheusML please see https://doi.org/10.25504/FAIRsharing.78b6a6
- for the model simulator Morpheus please see https://morpheus.gitlab.io
- for the model simulator Artistoo please see https://artistoo.net/converter.html
Contact
- https://imc.zih.tu-dresden.de/imc/index.php?page=contact
- lutz.brusch@tu-dresden.de
Content type(s)
Keyword(s)
Persistent identifier(s) of the repository
- FAIRsharing_doi:10.25504/FAIRsharing.b83dd9
- MIR:00000725
Repository type(s)
- disciplinary
Mission statement for designated community
Research data repository language(s)
- English
Data and/or service provider
- data provider
- service provider
Institution name
Additional name(s)
- TU Dresden
Identifier(s)
- ROR:042aqky30
Country
Type(s) of responsibility
- general
- technical
Type of institution
non-profit
Start date of responsibility
2021
Policies (1)
Policy Name
Database access
Type of access to research data repository
open
Data access (1)
Type of access to data
open
Data licenses (1)
DataLicense
Data upload (1)
Type of data upload
restricted
Data upload restriction type(s)
- registration
Data upload license (1)
Data upload license name
Persistent identifier system(s)
- other
Name of the repository software
- other
Versioning
yes
Data citation guideline
Enhanced Publication
unknown
Quality management
yes
Remarks
Remarks
Computational models in this research data repository are encoded in the standard MorpheusML (https://doi.org/10.25504/FAIRsharing.78b6a6) and can be executed by the simulation software Morpheus (https://morpheus.gitlab.io) and Artistoo (https://artistoo.net/converter.html).
Entry date
2023-02-03
Last update
2023-02-09
Cite this re3data.org record:
re3data.org: MorpheusML model repository; editing status 2023-02-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJNEB last accessed: 2024-04-29- Current projects
- EOSC FAIR-IMPACT
- re3data COREF
-
To the extent possible under law,
re3data.org
has waived all copyright and related or neighboring rights to
the database entries of re3data.org.
-
Except where otherwise noted, content on this site is licensed under a
Creative Commons Attribution 4.0 International License
.
- Cite this service: re3data.org - Registry of Research Data Repositories. https://doi.org/10.17616/R3D last accessed: 2024-04-29
