Repository details

Genomic Expression Archive

Name of repository
Genomic Expression Archive
Additional name(s)
  • GEA
Repository URL
https://www.ddbj.nig.ac.jp/gea/index-e.html
Subject(s)
Description
Genomic Expression Archive (GEA) is a public database of functional genomics data such as gene expression, epigenetics and genotyping SNP array. Both microarray- and sequence-based data are accepted in the MAGE-TAB format in compliance with MIAME and MINSEQE guidelines, respectively. GEA issues accession numbers, E-GEAD-n to experiment and A-GEAD-n to array design. Data exchange between GEA and EBI ArrayExpress is planned.
Contact
Content type(s)
Keyword(s)
Persistent identifier(s) of the repository
  • FAIRsharing_doi:10.25504/FAIRsharing.hESBcy
Repository size
31 functional genomics experiments
Repository type(s)
  • disciplinary
Mission statement for designated community
https://www.ddbj.nig.ac.jp/gea/about-e.html
Research data repository language(s)
  • English
  • Japanese
Data and/or service provider
  • data provider
Institution name
International Nucleotide Sequence Database Collaboration
Additional name(s)
  • INSDC
Country
International
Type(s) of responsibility
  • funding
Type of institution
non-profit
Institution name
National Institute of Genetics
Additional name(s)
  • 国立遺伝学研究所
  • NIG
Identifier(s)
  • ROR:02xg1m795
  • RRID:SCR_010836
Contact(s)
  • webmaster@nig.ac.jp
Country
Japan
Type(s) of responsibility
  • general
Type of institution
non-profit

Policies (3)

Policy Name
Nature Scientific Data - Data policies
Policy Name
Usage Policies and Disclaimers for Website, Data and Services Provided from DDBJ
Policy Name
INSDC policy

Database access

Type of access to research data repository
open

Data access (3)

Type of access to data
open
Type of access to data
embargoed
Type of access to data
restricted
Data access restriction type(s)
  • other

Data licenses (1)

DataLicense
Public Domain

Data upload (1)

Type of data upload
open

Data upload license (1)

Data upload license name
Submission of research data from human subjects
Persistent identifier system(s)
  • other
Data citation guideline
https://www.ddbj.nig.ac.jp/faq/en/ddbj-cited-article-e.html
Enhanced Publication
unknown
Quality management
yes

Application programming interfaces (1)

API type
FTP

Remarks

Remarks
GEA is a Scientific Data - Nature Recommended Data Repository. GEA and ArrayExpress will exchange public data in common MAGE-TAB format. DDBJ Center mirrors public ArrayExpress data to GEAs ftp site. Mutual data exchange between NCBI GEO and ArrayExpress is not realized so GEA data are not shared with GEO. ArrayExpress had been imported GEO data, however, this import was suspended. BioProject and BioSample registered during GEA submission are exchanged with NCBI/EBI in the framework of INSDC. CIBEX was expired and its data migrated to DDBJ's new expression archive.
Entry date
2019-12-05
Last update
2024-03-01
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Cite this re3data.org record:

re3data.org: Genomic Expression Archive; editing status 2024-03-01; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMO3 last accessed: 2024-04-27