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Found 23 result(s)
SWATHAtlas is a repository of mass spectrometry data of the human proteome. The repository provides open access to libraries of SWATH-MS (Sequential Windowed Acquisition of All Theoretical Fragment Ion Mass Spectra) datasets. SWATH-MS is a method which combines both data-independent acquisition (DIA) and targeted data analysis techniques for the collection and storage of fragmentation spectra of peptides. Compared to techniques of selected reaction monitoring (SRM), SWATH-MS allows for a more extensive throughput of proteins in a sample to be targeted. The spectra collected in SWATHAtlas can be interpreted with the help of software such as OpenSWATH or Peakview.
The SICAS Medical Image Repository is a freely accessible repository containing medical research data including medical images, surface models, clinical data, genomics data and statistical shape models. The data can freely be organized and shared on SMIR and made publicly accessible with a DOI. Dedicated data sets are organized as collections of anatomical regions (e.g Cochlea). The data can be filtered using a modular search and accessed on the web or through the SMIR API.
<<<!!!<<< Retirement of UniProt Metagenomic and Environmental Sequences (UniMES): UniProt has retired UniMES as there is now a resource at the EBI that is dedicated to serving metagenomic researchers. Henceforth, we recommend using the EBI Metagenomics portal instead https://www.ebi.ac.uk/metagenomics/ . In addition to providing a repository of metagenomics sequence data, EBI Metagenomics allows you to view functional and taxonomic analyses and to submit your own samples for analysis. >>>!!!>>> The UniProt Metagenomic and Environmental Sequences (UniMES) database is a repository specifically developed for metagenomic and environmental data. We provide UniMES clusters in order to obtain complete coverage of sequence space at different resolutions.
The overall vision for the SPARC Portal is to accelerate autonomic neuroscience research and device development by providing access to digital resources that can be shared, cited, visualized, computed, and used for virtual experimentation.
The Répertoire International des Sources Musicales (RISM) - International Inventory of Musical Sources - is an international, non-profit organization that aims to comprehensively document extant musical sources worldwide. These primary sources are music manuscripts or printed music editions, writings on music theory, and libretti. They are preserved in libraries, archives, churches, schools and private collections. RISM was founded in Paris in 1952 and is the largest and only international organization that documents written musical sources. RISM records what exists and where it can be found. As a result, by virtue of being cataloged in a comprehensive inventory, music traditions are protected while also being made available to musicologists and musicians alike. Such work is thus not an end in itself, but leads directly to practical applications.
The Durham High Energy Physics Database (HEPData), formerly: the Durham HEPData Project, has been built up over the past four decades as a unique open-access repository for scattering data from experimental particle physics. It currently comprises the data points from plots and tables related to several thousand publications including those from the Large Hadron Collider (LHC). The Durham HepData Project has for more than 25 years compiled the Reactions Database containing what can be loosly described as cross sections from HEP scattering experiments. The data comprise total and differential cross sections, structure functions, fragmentation functions, distributions of jet measures, polarisations, etc... from a wide range of interactions. In the new HEPData site (hepdata.net), you can explore new functionalities for data providers and data consumers, as well as the submission interface. HEPData is operated by CERN and IPPP at Durham University and is based on the digital library framework Invenio.
The International Union of Basic and Clinical Pharmacology (IUPHAR) / British Pharmacological Society (BPS) Guide to PHARMACOLOGY is an expert-curated resource of ligand-activity-target relationships, the majority of which come from high-quality pharmacological and medicinal chemistry literature. It is intended as a “one-stop shop” portal to pharmacological information and its main aim is to provide a searchable database with quantitative information on drug targets and the prescription medicines and experimental drugs that act on them. In future versions we plan to add resources for education and training in pharmacological principles and techniques along with research guidelines and overviews of key topics. We hope that the IUPHAR/BPS Guide to PHARMACOLOGY (abbreviated as GtoPdb) will be useful for researchers and students in pharmacology and drug discovery and provide the general public with accurate information on the basic science underlying drug action.
The Universal Protein Resource (UniProt) is a comprehensive resource for protein sequence and annotation data. The UniProt databases are the UniProt Knowledgebase (UniProtKB), the UniProt Reference Clusters (UniRef), and the UniProt Archive (UniParc).
STRING is a database of known and predicted protein interactions. The interactions include direct (physical) and indirect (functional) associations; they are derived from four sources: - Genomic Context - High-throughput Experiments - (Conserved) Coexpression - Previous Knowledge STRING quantitatively integrates interaction data from these sources for a large number of organisms, and transfers information between these organisms where applicable.
<<<!!!<<< The repository is offline >>>!!!>>> A collection of open content name datasets for Information Centric Networking. The "Content Name Collection" (CNC) lists and hosts open datasets of content names. These datasets are either derived from URL link databases or web traces. The names are typically used for research on Information Centric Networking (ICN), for example to measure cache hit/miss ratios in simulations.
arrayMap is a repository of cancer genome profiling data. Original) from primary repositories (e.g. NCBI GEO, EBI ArrayExpress, TCGA) is re-processed and annotated for metadata. Unique visualization of the processed data allows critical evaluation of data quality and genome information. Structured metadata provides easy access to summary statistics, with a focus on copy number aberrations in cancer entities.
The repository contains the complete model of the Bern campaign; only the upper part of the vault could not be measured due to renovation works carried out on the dome at the time of the campaign.
The World Glacier Monitoring Service (WGMS) collects standardized observations on changes in mass, volume, area and length of glaciers with time (glacier fluctuations), as well as statistical information on the distribution of perennial surface ice in space (glacier inventories). Such glacier fluctuation and inventory data are high priority key variables in climate system monitoring; they form a basis for hydrological modelling with respect to possible effects of atmospheric warming, and provide fundamental information in glaciology, glacial geomorphology and quaternary geology. The highest information density is found for the Alps and Scandinavia, where long and uninterrupted records are available. As a contribution to the Global Terrestrial/Climate Observing System (GTOS, GCOS), the Division of Early Warning and Assessment and the Global Environment Outlook of UNEP, and the International Hydrological Programme of UNESCO, the WGMS collects and publishes worldwide standardized glacier data.
The GTN-P database is an object-related database open for a diverse range of data. Because of the complexity of the PAGE21 project, data provided in the GTN-P management system are extremely diverse, ranging from active-layer thickness measurements once per year to flux measurement every second and everthing else in between. The data can be assigned to two broad categories: Quantitative data which is all data that can be measured numerically. Quantitative data comprise all in situ measurements, i.e. permafrost temperatures and active layer thickness (mechanical probing, frost/thaw tubes, soil temperature profiles). Qualitative data (knowledge products) are observations not based on measurements, such as observations on soils, vegetation, relief, etc.
<<<!!!<<< HON is no longer updated and will be permanently discontinued on December 15, 2022 >>>!!!>>>
<<<!!!<<< The repository is no longer available. 2018-11-20; COMPASS used to be provided and available at FORS but is no longer supported. >>>!!!>>>
The Integrated Catalogue (InK) of Mediathek of the Basel Academy of Art and Design (Hochschule für Gestaltung und Kunst Basel, HGK) hosts, collects, archives and makes available digital resources of HGK and its digital, special collections. It is available both to members of the Academy of Applied Sciences of Northwestern Switzerland (Fachhochschule Nordwestschweiz, FHNW) to which the HGK belongs and to the general public. In addition to data for internal university use (login area), there is a large amount of unrestricted, freely accessible content. The thematic focus is on contemporary art and design, art and design research, and topics related to the HGK. The sources cover a wide range of media: in addition to thesis and PDFs based documents, there are cluster objects, which assign several images, videos, audio and/or text files to a defined data set. The InK serves as an institutional repository for research data management and as a platform for hybrid publications.
The UniProt Knowledgebase (UniProtKB) is the central hub for the collection of functional information on proteins, with accurate, consistent and rich annotation. In addition to capturing the core data mandatory for each UniProtKB entry (mainly, the amino acid sequence, protein name or description, taxonomic data and citation information), as much annotation information as possible is added. This includes widely accepted biological ontologies, classifications and cross-references, and clear indications of the quality of annotation in the form of evidence attribution of experimental and computational data. The Universal Protein Resource (UniProt) is a comprehensive resource for protein sequence and annotation data. The UniProt databases are the UniProt Knowledgebase (UniProtKB), the UniProt Reference Clusters (UniRef), and the UniProt Archive (UniParc). The UniProt Metagenomic and Environmental Sequences (UniMES) database is a repository specifically developed for metagenomic and environmental data. The UniProt Knowledgebase,is an expertly and richly curated protein database, consisting of two sections called UniProtKB/Swiss-Prot and UniProtKB/TrEMBL.
DaSCH is the trusted platform and partner for open research data in the Humanities. DaSCH develops and operates a FAIR long-term repository and a generic virtual research environment for open research data in the humanities in Switzerland. We provide long-term direct access to the data, enable their continuous editing and allow for precise citation of single objects within a dataset. We ensure interoperability with tools used by the Humanities and Cultural Sciences communities and foster the use of standards. The development of our platform happens in close cooperation with these communities. We provide training and advice in the area of research data management, promote open data and the use of standards. DaSCH is the coordinating institution and representative of Switzerland in the European Research Infrastructure Consortium ‘Digital Research Infrastructure for the Arts and Humanities’ (DARIAH ERIC). Within this mandate, we actively engage in community building within Switzerland and abroad. DaSCH cooperates with national and international organizations and initiatives in order to provide services that are fit for purpose within the broader Swiss open research data landscape and that are coordinated with other institutions such as FORS. We base our actions on the values reliability, flexibility, appreciation, curiosity, and persistence. Furthermore, DARIAH’s activities in Switzerland are coordinated by DaSCH and DaSCH is acting as DARIAH-CH Coordination Office.
The IMEx consortium is an international collaboration between a group of major public interaction data providers who have agreed to share curation effort and develop and work to a single set of curation rules when capturing data from both directly deposited interaction data or from publications in peer-reviewed journals, capture full details of an interaction in a “deep” curation model, perform a complete curation of all protein-protein interactions experimentally demonstrated within a publication, make these interaction available in a single search interface on a common website, provide the data in standards compliant download formats, make all IMEx records freely accessible under the Creative Commons Attribution License