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Found 10 result(s)

National Genomic Resources Repository

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National Genomic Resources Repository is established as an institutional framework for methodical and centralized efforts to collect, generate, conserve and distribute genomic resources for agricultural research.

Open Archive for Miscellaneous Data

多元数据归档库

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The Open Archive for Miscellaneous Data (OMIX) database is a data repository developed and maintained by the National Genomics Data Center (NGDC). The database specializes in descriptions of biological studies, including genomic, proteomic, and metabolomic, as well as data that do not fit in the structured archives at other databases in NGDC. It can accept various types of studies described via a simple format and enables researchers to upload supplementary information and link to it from the publication.

SWISS-MODEL Repository

SMR

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The SWISS-MODEL Repository is a database of annotated three-dimensional comparative protein structure models generated by the fully automated homology-modelling pipeline SWISS-MODEL.

China Tropical Crop Germplasm Resources Information Network

National Tropical Crop Germplasm Resource Center

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The National Tropical Plant Germplasm Repository, supported by the Institute of Tropical Crop Variety Resources of the Chinese Academy of Tropical Agricultural Sciences (CATAS) and jointly constructed by 11 units including the Institute of Fruit Tree Research of the Guangdong Academy of Agricultural Sciences and Hainan University, aims to provide information and physical support for scientific and technological innovation in tropical crop seed industry, increase the income of farmers in hot regions, alleviate poverty, the "One Belt One Road" initiative and the National Tropical Agricultural Science Centre. The National Centre for Tropical Agricultural Sciences (NCTAS) provides information and physical support for tropical crop germplasm resources. The National Tropical Plant Germplasm Repository consists of a national medium-term tropical crop germplasm preservation repository, a medium-term tropical forage preservation repository and 12 national nurseries, covering 24 crops in nine categories, including rubber trees, tropical forage, tropical fruit trees, tropical oilseeds, tropical aromatic beverages, southern medicine, tropical grains, tropical flowers and tropical special vegetables, with more than 26,000 copies of resources, accounting for more than 90% of the total tropical crop germplasm resources in China. The resources account for more than 90% of the total amount of tropical crop germplasm resources in China. It has built an efficient management system and a stable human resources team, a conservation system that combines centralized conservation in germplasm banks and moderate distribution in germplasm nurseries, a technical specification system for the unified description of germplasm resources of major tropical crops, and an integrated system for the conservation and utilization of China's tropical crop germplasm resource information network, ensuring the efficient operation and sustainable development of the national tropical crop germplasm resource bank.

National Freshwater Genetic Resource Center

国家淡水水产种质资源库

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National freshwater aquatic germplasm repository, competent department: Ministry of Agriculture and Rural Affairs, relying unit: China Academy of Fisheries Science. By the Heilongjiang Fisheries Research Institute, Yangtze River Fisheries Research Institute, Freshwater Fisheries Research Center, Pearl River Fisheries Research Institute, Fisheries Machinery and Instruments Research Institute and Shanghai Ocean University 6 units. Relying on the unit's outstanding ability to informatization of resources, the establishment of an advanced system, functional, stable operation, high visibility in the field of portal, can carry out deep mining and digital processing of freshwater aquatic germplasm resources information. The co-construction unit has relatively complete functional laboratory, preservation library and base facilities, with the hardware conditions to provide knowledge-based and professional services of freshwater aquatic germplasm resources. The participants have many years of experience in the collection and integration of freshwater aquatic germplasm resources, with solid professional background and outstanding business ability, which can improve the depth and breadth of integration and utilization of freshwater aquatic germplasm resources.

International Institute of Tropical Agriculture datasets

International Institute of Tropical Agriculture CKAN repository

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IITA conducts research on the following thematic areas: Biotechnology and genetic improvement, Natural resource management, Social science and agribusiness, and Plant production and plant health.

NCBI Genome

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<<<!!!<<< Effective May 2024, NCBI's Genome resource will no longer be available. NCBI Genome data can now be found on the NCBI Datasets taxonomy pages. https://www.re3data.org/repository/r3d100014298 >>>!!!>>> The Genome database contains annotations and analysis of eukaryotic and prokaryotic genomes, as well as tools that allow users to compare genomes and gene sequences from humans, microbes, plants, viruses and organelles. Users can browse by organism, and view genome maps and protein clusters.

The Global Proteome Machine

GPM

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The Global Proteome Machine (GPM) is a protein identification database. This data repository allows users to post and compare results. GPM's data is provided by contributors like The Informatics Factory, University of Michigan, and Pacific Northwestern National Laboratories. The GPM searchable databases are: GPMDB, pSYT, SNAP, MRM, PEPTIDE and HOT.

Xanthobase

Xanthomonas oryzae pv. oryzae genome database

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<<<!!!<<< The repository is no longer available. No known URL could be resolved successfully. >>>!!!>>>

AceView

AceView genes

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AceView provides a curated, comprehensive and non-redundant sequence representation of all public mRNA sequences (mRNAs from GenBank or RefSeq, and single pass cDNA sequences from dbEST and Trace). These experimental cDNA sequences are first co-aligned on the genome then clustered into a minimal number of alternative transcript variants and grouped into genes. Using exhaustively and with high quality standards the available cDNA sequences evidences the beauty and complexity of mammals’ transcriptome, and the relative simplicity of the nematode and plant transcriptomes. Genes are classified according to their inferred coding potential; many presumably non-coding genes are discovered. Genes are named by Entrez Gene names when available, else by AceView gene names, stable from release to release. Alternative features (promoters, introns and exons, polyadenylation signals) and coding potential, including motifs, domains, and homologies are annotated in depth; tissues where expression has been observed are listed in order of representation; diseases, phenotypes, pathways, functions, localization or interactions are annotated by mining selected sources, in particular PubMed, GAD and Entrez Gene, and also by performing manual annotation, especially in the worm. In this way, both the anatomy and physiology of the experimentally cDNA supported human, mouse and nematode genes are thoroughly annotated.