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Found 20 result(s)

EMDataResource

formerly: EMDataBank

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Cryo electron microscopy enables the determination of 3D structures of macromolecular complexes and cells from 2 to 100 Å resolution. EMDataResource is the unified global portal for one-stop deposition and retrieval of 3DEM density maps, atomic models and associated metadata, and is a joint effort among investigators of the Stanford/SLAC CryoEM Facility and the Research Collaboratory for Structural Bioinformatics (RCSB) at Rutgers, in collaboration with the EMDB team at the European Bioinformatics Institute. EMDataResource also serves as a resource for news, events, software tools, data standards, and validation methods for the 3DEM community. The major goal of the EMDataResource project in the current funding period is to work with the 3DEM community to (1) establish data-validation methods that can be used in the process of structure determination, (2) define the key indicators of a well-determined structure that should accompany every deposition, and (3) implement appropriate validation procedures for maps and map-derived models into a 3DEM validation pipeline.

SeaBASS

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SeaBASS, the publicly shared archive of in situ oceanographic and atmospheric data maintained by the NASA Ocean Biology Processing Group (OBPG). High quality in situ measurements are prerequisite for satellite data product validation, algorithm development, and many climate-related inquiries. As such, the NASA Ocean Biology Processing Group (OBPG) maintains a local repository of in situ oceanographic and atmospheric data to support their regular scientific analyses. The SeaWiFS Project originally developed this system, SeaBASS, to catalog radiometric and phytoplankton pigment data used their calibration and validation activities. To facilitate the assembly of a global data set, SeaBASS was expanded with oceanographic and atmospheric data collected by participants in the SIMBIOS Program, under NASA Research Announcements NRA-96 and NRA-99, which has aided considerably in minimizing spatial bias and maximizing data acquisition rates. Archived data include measurements of apparent and inherent optical properties, phytoplankton pigment concentrations, and other related oceanographic and atmospheric data, such as water temperature, salinity, stimulated fluorescence, and aerosol optical thickness. Data are collected using a number of different instrument packages, such as profilers, buoys, and hand-held instruments, and manufacturers on a variety of platforms, including ships and moorings.

National Biomedical Imaging Archive

NBIA

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<<<!!!<<< The NCI CBIIT instance of the NBIA application was retired in March 2022. All data in the application has been transferred to The Cancer Image Archive https://www.re3data.org/repository/r3d100011559 and is available via the Access the Data > Search Radiology Portal menu item. The NBIA software is now maintained on GitHub, and can be built and deployed with the latest improvements and fixes that have been completed for TCIA. >>>!!!>>>

Ukrainian Geospatial Data Center

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The department specializes on developing complex distributed systems for satellite data processing. The main task given to the department is development, validation and implementation of different satellite data processing methods in the form of information services and certain systems

The Global Proteome Machine

GPM

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The Global Proteome Machine (GPM) is a protein identification database. This data repository allows users to post and compare results. GPM's data is provided by contributors like The Informatics Factory, University of Michigan, and Pacific Northwestern National Laboratories. The GPM searchable databases are: GPMDB, pSYT, SNAP, MRM, PEPTIDE and HOT.

The Forensic Linguistic Databank

FoLD

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The Forensic Linguistic Databank (FoLD) is a permanent, controlled access online repository for forensic linguistic data, including malicious communication data, investigative interview data, and forensic evidence validation data for both speech and text. We broadly understand forensic linguistics as any academic research with a potential to improve the delivery of justice through the analysis of language. FoLD thus comprises a wide range of datasets with relevance to forensic linguistics and language and law, including commercial extortion letters, investigative interviews in police and other contexts, legal documents, forum posts from far-right online groups, and comment threads from political blogs. The intention for the databank is to not only further academic research into forensic linguistics by developing new methods and approaches but also to directly contribute to impact in assisting the delivery of justice. Therefore, research projects using this data will validate methods for forensic analysis, further the effectiveness of interviewing techniques used by British police, and help tackle internet crime and abuse on behalf of law enforcement beneficiaries, such as the National Crime Agency.

Global Precipitation Measurement

GPM

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The Global Precipitation Measurement (GPM) mission is an international network of satellites that provide the next-generation global observations of rain and snow. Building upon the success of the Tropical Rainfall Measuring Mission (TRMM), the GPM concept centers on the deployment of a “Core” satellite carrying an advanced radar / radiometer system to measure precipitation from space and serve as a reference standard to unify precipitation measurements from a constellation of research and operational satellites.

ASTER j-spacesystems

Advanced Spaceborne Thermal Emission and Reflection Radiometer Ground Data Systems

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!!! We will terminate ASTER Products Distribution Service in March 2016 although we have been providing ASTER Products since November 20, 2000. !!! ASTER (Advanced Spaceborne Thermal Emission and Reflection radiometer) is the high efficiency optical imager which covers a wide spectral region from the visible to the thermal infra-red by 14 spectral bands. ASTER acquires data which can be used in various fields in earth science. ASTER was launched from Vandenberg Air Force Base in California, USA in 1999 aboard the Terra, which is the first satellite of the EOS Project. The purpose of ASTER project is to make contributions to extend the understanding of local and regional phenomena on the Earth surface and its atmosphere. The followings are ASTER related information, which includes ASTER instrument, ASTER Ground Data System, ASTER Science Activities, ASTER Data Distribution and so on. ASTER Search provides services to search and order ASTER data products on the website.

Tropospheric Emission Spectrometer

TES

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TES is the first satellite instrument to provide simultaneous concentrations of carbon monoxide, ozone, water vapor and methane throughout Earth’s lower atmosphere. This lower atmosphere (the troposphere) is situated between the surface and the height at which aircraft fly, and is an important part of the atmosphere that we often impact with our activities.

OceanSITES

Taking the pulse of the global ocean

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OceanSITES is a worldwide system of long-term, deepwater reference stations measuring dozens of variables and monitoring the full depth of the ocean from air-sea interactions down to 5,000 meters. Since 1999, the international OceanSITES science team has shared both data and costs in order to capitalize on the enormous potential of these moorings. The growing network now consists of about 30 surface and 30 subsurface arrays. Satellite telemetry enables near real-time access to OceanSITES data by scientists and the public. OceanSITES moorings are an integral part of the Global Ocean Observing System. They complement satellite imagery and ARGO float data by adding the dimensions of time and depth.

Water Isotope System for Data Analysis, Visualization and Electronic Retrieval

WISER

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WISER is a self-service platform for data of the Global Networks of Isotopes in Precipitation (GNIP) and Rivers (GNIR), hosted within the IAEA's repository for technical resources (NUCLEUS). GNIP in WISER currently contains over 130,000 records, and stable isotopes are current to the end of 2013, and will be updated as verified data comes in. Parts of the GNIR water isotope data is online as well (synoptic/time series), although we are still in process of verifying and completing GNIR data uploads and for other isotopic parameters over the next year. Check back occasionally for GNIR updates. Tritium data after 2009 is in the process of being updated in the next year. When accessing WISER through the URL https://nucleus.iaea.org/wiser, you will be forwarded to the NUCLEUS log-in page. After entering your user credentials and validation, you will be forwarded to the WISER landing page.

AERONET

AErosol RObotic NETwork

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The AERONET (AErosol RObotic NETwork) program is a federation of ground-based remote sensing aerosol networks established by NASA and PHOTONS (PHOtométrie pour le Traitement Opérationnel de Normalisation Satellitaire; Univ. of Lille 1, CNES, and CNRS-INSU) and is greatly expanded by networks (e.g., RIMA, AeroSpan, AEROCAN, and CARSNET) and collaborators from national agencies, institutes, universities, individual scientists, and partners. The program provides a long-term, continuous and readily accessible public domain database of aerosol optical, microphysical and radiative properties for aerosol research and characterization, validation of satellite retrievals, and synergism with other databases. The network imposes standardization of instruments, calibration, processing and distribution.

Remote Sensing Systems

RSS

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Remote Sensing Systems is a world leader in processing and analyzing microwave data from satellite microwave sensors. We specialize in algorithm development, instrument calibration, ocean product development, and product validation. We have worked with more than 30 satellite microwave radiometer, sounder, and scatterometer instruments over the past 40 years. Currently, we operationally produce satellite retrievals for SSMIS, AMSR2, WindSat, and ASCAT. The geophysical retrievals obtained from these sensors are made available in near-real-time (NRT) to the global scientific community and general public via FTP and this web site.

Precipitation Processing System

PPS

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The Precipitation Processing System (PPS) evolved from the Tropical Rainfall Measuring Mission (TRMM) Science Data and Information System (TSDIS). The purpose of the PPS is to process, analyze and archive data from the Global Precipitation Measurement (GPM) mission, partner satellites and the TRMM mission. The PPS also supports TRMM by providing validation products from TRMM ground radar sites. All GPM, TRMM and Partner public data products are available to the science community and the general public from the TRMM/GPM FTP Data Archive. Please note that you need to register to be able to access this data. Registered users can also search for GPM, partner and TRMM data, order custom subsets and set up subscriptions using our PPS Data Products Ordering Interface (STORM)

GENCODE

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GENCODE is a scientific project in genome research and part of the ENCODE (ENCyclopedia Of DNA Elements) scale-up project. The GENCODE consortium was initially formed as part of the pilot phase of the ENCODE project to identify and map all protein-coding genes within the ENCODE regions (approx. 1% of Human genome). Given the initial success of the project, GENCODE now aims to build an “Encyclopedia of genes and genes variants” by identifying all gene features in the human and mouse genome using a combination of computational analysis, manual annotation, and experimental validation, and annotating all evidence-based gene features in the entire human genome at a high accuracy.

Barcode of Life Data Systems

BOLD Systems

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The Barcode of Life Data Systems (BOLD) provides DNA barcode data. BOLD's online workbench supports data validation, annotation, and publication for specimen, distributional, and molecular data. The platform consists of four main modules: a data portal, a database of barcode clusters, an educational portal, and a data collection workbench. BOLD is the go-to site for DNA-based identification. As the central informatics platform for DNA barcoding, BOLD plays a crucial role in assimilating and organizing data gathered by the international barcode research community. Two iBOL (International Barcode of Life) Working Groups are supporting the ongoing development of BOLD.

The World Data Center for Remote Sensing of the Atmosphere

WDC-RSAT

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The World Data Center for Remote Sensing of the Atmosphere, WDC-RSAT, offers scientists and the general public free access (in the sense of a “one-stop shop”) to a continuously growing collection of atmosphere-related satellite-based data sets (ranging from raw to value added data), information products and services. Focus is on atmospheric trace gases, aerosols, dynamics, radiation, and cloud physical parameters. Complementary information and data on surface parameters (e.g. vegetation index, surface temperatures) is also provided. This is achieved either by giving access to data stored at the data center or by acting as a portal containing links to other providers.

AVISO+

Satellite Altimetry Data

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AVISO stands for "Archiving, Validation and Interpretation of Satellite Oceanographic data". Here, you will find data, articles, news and tools to help you discover or improve your skills in the altimetry domain through four key themes: ocean, coast, hydrology and ice. Altimetry is a technique for measuring height. Satellite altimetry measures the time taken by a radar pulse to travel from the satellite antenna to the surface and back to the satellite receiver. Combined with precise satellite location data, altimetry measurements yield sea-surface heights.

ORegAnno

Open regulatory annotation database

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<<<!!!<<< 2017-06-02: We recently suffered a server failure and are working to bring the full ORegAnno website back online. In the meantime, you may download the complete database here: http://www.oreganno.org/dump/ ; Data are also available through UCSC Genome Browser (e.g., hg38 -> Regulation -> ORegAnno) https://genome.ucsc.edu/cgi-bin/hgTrackUi?hgsid=686342163_2it3aVMQVoXWn0wuCjkNOVX39wxy&c=chr1&g=oreganno >>>!!!>>> The Open REGulatory ANNOtation database (ORegAnno) is an open database for the curation of known regulatory elements from scientific literature. Annotation is collected from users worldwide for various biological assays and is automatically cross-referenced against PubMED, Entrez Gene, EnsEMBL, dbSNP, the eVOC: Cell type ontology, and the Taxonomy database, where appropriate, with information regarding the original experimentation performed (evidence). ORegAnno further provides an open validation process for all regulatory annotation in the public domain. Assigned validators receive notification of new records in the database and are able to cross-reference the citation to ensure record integrity. Validators have the ability to modify any record (deprecating the old record and creating a new one) if an error is found. Further, any contributor to the database can comment on any annotation by marking errors, or adding special reports into function as they see fit. These features of ORegAnno ensure that the collection is of the highest quality and uniquely provides a dynamic view of our changing understanding of gene regulation in the various genomes.

NOAA Antarctic UV Monitoring Network

formerly: National Science Foundation Polar Programs UV Monitoring Network

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The National Science Foundation (NSF) Ultraviolet (UV) Monitoring Network provides data on ozone depletion and the associated effects on terrestrial and marine systems. Data are collected from 7 sites in Antarctica, Argentina, United States, and Greenland. The network is providing data to researchers studying the effects of ozone depletion on terrestrial and marine biological systems. Network data is also used for the validation of satellite observations and for the verification of models describing the transfer of radiation through the atmosphere.