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The objective of this Research Coordination Network project is to develop an international network of researchers who use genetic methodologies to study the ecology and evolution of marine organisms in the Indo-Pacific to share data, ideas and methods. DIPnet was created to advance genetic diversity research in the Indo-Pacific by aggregating population genetic metadata into a searchable database (GeOME).
The Protein Data Bank (PDB) is an archive of experimentally determined three-dimensional structures of biological macromolecules that serves a global community of researchers, educators, and students. The data contained in the archive include atomic coordinates, crystallographic structure factors and NMR experimental data. Aside from coordinates, each deposition also includes the names of molecules, primary and secondary structure information, sequence database references, where appropriate, and ligand and biological assembly information, details about data collection and structure solution, and bibliographic citations. The Worldwide Protein Data Bank (wwPDB) consists of organizations that act as deposition, data processing and distribution centers for PDB data. Members are: RCSB PDB (USA), PDBe (Europe) and PDBj (Japan), and BMRB (USA). The wwPDB's mission is to maintain a single PDB archive of macromolecular structural data that is freely and publicly available to the global community.
The portal is a web site for specialized georeferenced databases and tools for the analysis of marine bacterial, archaeal, and phage genomes and metagenomes. Megx offers three main functions: 1. Mapserver Popup The Genes Mapserver can be used to view georeferenced genome, metagenome and rRNA sampling sites and selected physicochemical and biological parameters. 2. Geographic-BLAST - can query the genome and metagenome databases we offer and view the distribution of your georeferenced hits. 3. "Browse" functions - The "Browse" menu in the navigation bar offers additional functionality. The Microbial Metagenomic Traits Database (MiMeT DB) contains a pre-calculated set of metagenomic traits.