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Found 30 result(s)
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Silkworm Pathogen Database (SilkPathDB) is a comprehensive resource for studying on pathogens of silkworm, including microsporidia, fungi, bacteria and virus. SilkPathDB provides access to not only genomic data including functional annotation of genes and gene products, but also extensive biological information for gene expression data and corresponding researches. SilkPathDB will be help with researches on pathogens of silkworm as well as other Lepidoptera insects.
This Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house all publicly available QTL and trait mapping data (i.e. trait and genome location association data; collectively called "QTL data" on this site) on livestock animal species for easily locating and making comparisons within and between species. New database tools are continuely added to align the QTL and association data to other types of genome information, such as annotated genes, RH / SNP markers, and human genome maps. Besides the QTL data from species listed below, the QTLdb is open to house QTL/association date from other animal species where feasible. Note that the JAS along with other journals, now require that new QTL/association data be entered into a QTL database as part of their publication requirements.
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CPLM (Compendium of Protein Lysine Modifications) is an online data resource specifically designed for protein lysine modifications (PLMs). The CPLM database was extended and adapted from our CPLA 1.0 (Compendium of Protein Lysine Acetylation) database and the 2.0 release contains 203,972 modification events on 189,919 modified lysines in 45,748 proteins for 12 types of PLMs, including Nε-lysine acetylation, ubiquitination, methylation, sumoylation, glycation, butyrylation, crotonylation, malonylation, propionylation, succinylation, phosphoglycerylation and prokaryotic Pupylation.
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NONCODE is an integrated knowledge database dedicated to non-coding RNAs (excluding tRNAs and rRNAs). Now, there are 16 species in NONCODE(human, mouse, cow, rat, chicken, fruitfly, zebrafish, celegans, yeast, Arabidopsis, chimpanzee, gorilla, orangutan, rhesus macaque, opossum and platypus).The source of NONCODE includes literature and other public databases. We searched PubMed using key words ‘ncrna’, ‘noncoding’, ‘non-coding’,‘no code’, ‘non-code’, ‘lncrna’ or ‘lincrna. We retrieved the new identified lncRNAs and their annotation from the Supplementary Material or web site of these articles. Together with the newest data from Ensembl , RefSeq, lncRNAdb and GENCODE were processed through a standard pipeline for each species.
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Species included in PlantTFDB 4.0 covers the main lineages of green plants. Therefore, PlantTFDB provides genomic TF repertoires across Viridiplantae. To provide comprehensive information for the TF family, a brief introduction and key references are presented for each family. Comprehensive annotations are made for each identified TF, including functional domains, 3D structures, gene ontology (GO), plant ontology (PO), expression information, expert-curated functional description, regulation information, interaction, conserved elements, references, and annotations in various databases such as UniProt, RefSeq, TransFac, STRING, and VISTA. By inferring orthologous groups and constructing phylogenetic trees, evolutionary relationships among identified TFs were inferred. In addition, PlantTFDB has a simple and user-friendly interface to allow users to query based on combined conditions or make sequence similarity search using BLAST.
China Earthquake Data Center provides Seismic data, geomagnetic data, geoelectric data, terrain data and underground fluid change data. It is only open in the Seismological Bureau.
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Chinese Crop Germplasm Resources Information System provides germplasm resources and genetic information for crops including grains, fruits, vegetables, oilseeds, and fibers. The data includes crop fingerprint and DNA sequence data.
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DEG hosts records of currently available essential genomic elements, such as protein-coding genes and non-coding RNAs, among bacteria, archaea and eukaryotes. Essential genes in a bacterium constitute a minimal genome, forming a set of functional modules, which play key roles in the emerging field, synthetic biology.
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Dog Genome SNP Database (DoGSD) is a data container for the variation information of dog/wolf genomes. It was designed and constructed as an SNPs detector and visualization tool to provide the research community a useful resource for the study of dog's population, evolution, phenotype and life habit.
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MTD is focused on mammalian transcriptomes with a current version that contains data from humans, mice, rats and pigs. Regarding the core features, the MTD browses genes based on their neighboring genomic coordinates or joint KEGG pathway and provides expression information on exons, transcripts, and genes by integrating them into a genome browser. We developed a novel nomenclature for each transcript that considers its genomic position and transcriptional features.
The IMPC is a confederation of international mouse phenotyping projects working towards the agreed goals of the consortium: To undertake the phenotyping of 20,000 mouse mutants over a ten year period, providing the first functional annotation of a mammalian genome. Maintain and expand a world-wide consortium of institutions with capacity and expertise to produce germ line transmission of targeted knockout mutations in embryonic stem cells for 20,000 known and predicted mouse genes. Test each mutant mouse line through a broad based primary phenotyping pipeline in all the major adult organ systems and most areas of major human disease. Through this activity and employing data annotation tools, systematically aim to discover and ascribe biological function to each gene, driving new ideas and underpinning future research into biological systems; Maintain and expand collaborative “networks” with specialist phenotyping consortia or laboratories, providing standardized secondary level phenotyping that enriches the primary dataset, and end-user, project specific tertiary level phenotyping that adds value to the mammalian gene functional annotation and fosters hypothesis driven research; and Provide a centralized data centre and portal for free, unrestricted access to primary and secondary data by the scientific community, promoting sharing of data, genotype-phenotype annotation, standard operating protocols, and the development of open source data analysis tools. Members of the IMPC may include research centers, funding organizations and corporations.
In order to meet the needs of research data management for Peking University. The PKU library cooperate with the NSFC-PKU data center for management science, PKU science and research department, PKU social sciences department to jointly launch the Peking University Open Research Data Platform. PKU Open research data provides preservation, management and distribution services for research data. It encourage data owner to share data and data users to reuse data.
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The National Earth System Science Data Sharing Service Platform is one of the 23 national science and technology infrastructure platforms identified by the Ministry of Science and Technology and the Ministry of Finance as the first batch of platforms. The platform is led by the Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences. Since its construction in 2003, more than 40 domestic and overseas units have participated in the platform construction. National Earth System Science Data Sharing Service Platform main development course: The overall goal of the platform is to integrate and integrate the data resources generated by data center groups, universities, research institutes and scientists in China and abroad, to import international data resources and to receive the data resources generated by major national scientific research projects. Based on this, Processing data products. We will improve standards and operational mechanisms and provide data support for Earth system science research and sustainable socio-economic development through the Earth System Scientific Data Sharing Network Platform and professional service teams. The recent consolidation of data resources required to share the research on land surface systems and human-land relations.
The International Ocean Discovery Program (IODP) is an international marine research collaboration that explores Earth's history and dynamics using ocean-going research platforms to recover data recorded in seafloor sediments and rocks and to monitor subseafloor environments. IODP depends on facilities funded by three platform providers with financial contributions from five additional partner agencies. Together, these entities represent 26 nations whose scientists are selected to staff IODP research expeditions conducted throughout the world's oceans. IODP expeditions are developed from hypothesis-driven science proposals aligned with the program's science plan Illuminating Earth's Past, Present, and Future. The science plan identifies 14 challenge questions in the four areas of climate change, deep life, planetary dynamics, and geohazards. Until 2013 under the name: International Ocean Drilling Program.
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Introduction of genome-scale metabolic network: The completion of genome sequencing and subsequent functional annotation for a great number of species enables the reconstruction of genome-scale metabolic networks. These networks, together with in silico network analysis methods such as the constraint based methods (CBM) and graph theory methods, can provide us systems level understanding of cellular metabolism. Further more, they can be applied to many predictions of real biological application such as: gene essentiality analysis, drug target discovery and metabolic engineering
Complete Genomics provides free public access to a variety of whole human genome data sets generated from Complete Genomics’ sequencing service. The research community can explore and familiarize themselves with the quality of these data sets, review the data formats provided from our sequencing service, and augment their own research with additional summaries of genomic variation across a panel of diverse individuals. The quality of these data sets is representative of what a customer can expect to receive for their own samples. This public genome repository comprises genome results from both our Standard Sequencing Service (69 standard, non-diseased samples) and the Cancer Sequencing Service (two matched tumor and normal sample pairs). In March 2013 Complete Genomics was acquired by BGI-Shenzhen , the world’s largest genomics services company. BGI is a company headquartered in Shenzhen, China that provides comprehensive sequencing and bioinformatics services for commercial science, medical, agricultural and environmental applications. Complete Genomics is now focused on building a new generation of high-throughput sequencing technology and developing new and exciting research, clinical and consumer applications.
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VSSO collects and provides Space science data from Chinese missions. Chinese Space Science Center is a member of ICSU World Data System
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During cell cycle, numerous proteins temporally and spatially localized in distinct sub-cellular regions including centrosome (spindle pole in budding yeast), kinetochore/centromere, cleavage furrow/midbody (related or homolog structures in plants and budding yeast called as phragmoplast and bud neck, respectively), telomere and spindle spatially and temporally. These sub-cellular regions play important roles in various biological processes. In this work, we have collected all proteins identified to be localized on kinetochore, centrosome, midbody, telomere and spindle from two fungi (S. cerevisiae and S. pombe) and five animals, including C. elegans, D. melanogaster, X. laevis, M. musculus and H. sapiens based on the rationale of "Seeing is believing" (Bloom K et al., 2005). Through ortholog searches, the proteins potentially localized at these sub-cellular regions were detected in 144 eukaryotes. Then the integrated and searchable database MiCroKiTS - Midbody, Centrosome, Kinetochore, Telomere and Spindle has been established.
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GSA is a data repository specialized for archiving raw sequence reads. It supports data generated from a variety of sequencing platforms ranging from Sanger sequencing machines to single-cell sequencing machines and provides data storing and sharing services free of charge for worldwide scientific communities. In addition to raw sequencing data, GSA also accommodates secondary analyzed files in acceptable formats (like BAM, VCF). Its user-friendly web interfaces simplify data entry and submitted data are roughly organized as two parts, viz., Metadata and File, where the former can be further assorted into BioProject, BioSample, Experiment and Run, and the latter contains raw sequence reads.
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Welcome to our Atomic & Molecular Database in the Institute of Applied Physics and Computational Mathematics (IAPCM). The database is intended to collect, assess and compile atomic and molecular data for various elementary processes, and especially data needed in plasma simulation and diagnosis. Part data came from the old version of the SPECTR database(by A.Ya Faenov et al).
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Chinese National Arctic & Antarctic Data Center(CN-NADC) is a national facility within the Polar research institute of China (PRIC), which is a research institute under the State Oceanic Administration (SOA) of China. CN-NADC was established in response to Chinese participation in the Article III.1.c of Antarctic Treaty System - (ATS — http://www.ats.aq) and Chinese Polar Data Policy(http://www.chinare.org.cn/standardDetail/?id=477). CN-NADC serves as the only authorized institution in China to capture, standard manage and long-term preserve the data and samples information, and to provide sustainable polar data service. In 2003, CN-NADC became one of the nodes of ‘National Data Sharing Infrastructure of Earth Science’ (GEODATA,http://www.geodata.cn/), which’s one of the Platforms of the National Science and Technology Infrastructures (NSTI, http://www.escience.gov.cn/) supported by the Ministry of Science and Technology (MOST) and the Ministry of Finance of People’s Republic of China.
CERN, DESY, Fermilab and SLAC have built the next-generation High Energy Physics (HEP) information system, INSPIRE. It combines the successful SPIRES database content, curated at DESY, Fermilab and SLAC, with the Invenio digital library technology developed at CERN. INSPIRE is run by a collaboration of CERN, DESY, Fermilab, IHEP, and SLAC, and interacts closely with HEP publishers, arXiv.org, NASA-ADS, PDG, HEPDATA and other information resources. INSPIRE represents a natural evolution of scholarly communication, built on successful community-based information systems, and provides a vision for information management in other fields of science.
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World Data System for Cold and Arid Regions(CARD) is a new scientific data sharing system which is established on the basis of the former World Data Center for Glaciology and Geocryology, Lanzhou and other data centers hosted by Cold and Arid Regions Environmental and Engineering Research Institute, Chinese Academy of Sciences. World Data System for Cold and Arid Regions is one of the constituents of World Data System. The data sharing system's main goals are to collect, manage and store the scientific data of Cold and Arid Regions area in China and provide the services for the scientific research of Cold and Arid Regions.
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China’s digital forestry information platform was constructed according to the criteria and index system of forest sustainable management. the relative social, economic, and politic data was considered and collected, the database represents not only the current forestry development, but also the social, politic, and economic situations.
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China Meteorological Data Service Center, an upgraded system of the meteorological data sharing network, is an important component of the underlying national science and technology platform and a main portal application system of meteorological cloud. It is an authoritative and unified shared service platform for China Meteorological Administration to open its meteorological data resources to domestic and global users, and a data supporting platform for China to open its meteorological service market and promote the sharing and efficient application of meteorological information resources as a new meteorological service system. The comprehensive meteorological database provide online and offline shared services, the existing data types including global upper-air sounding data, surface observations, ocean observations, numerical forecast products, agro-meteorological data of ground observation data encryption, aircraft soundings, numerical weather prediction analysis field data, GPS-Met, Storm 2 No, GOES-9 satellite data, soil moisture, aircraft reported sandstorm monitoring, TOVS, ATOVS, wind profilers, satellite detection information.