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Found 29 result(s)

ExPASy Bioinformatics Resource Portal

SIB Bioinformatics Resource Portal

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Swiss Institute of Bioinformatics (SIB) coordinates research and education in bioinformatics throughout Switzerland and provides bioinformatics services to the national and international research community. ExPASy gives access to numerous repositories and databases of SIB. For example: array map, MetaNetX, SWISS-MODEL and World-2DPAGE, and many others see a list here http://www.expasy.org/resources

Global Trade Analysis Project

The GTAP Data Base

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The centerpiece of the Global Trade Analysis Project is a global data base describing bilateral trade patterns, production, consumption and intermediate use of commodities and services. The GTAP Data Base consists of bilateral trade, transport, and protection matrices that link individual country/regional economic data bases. The regional data bases are derived from individual country input-output tables, from varying years.

NASA/IPAC Extragalactic Database

NED

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NED is a comprehensive database of multiwavelength data for extragalactic objects, providing a systematic, ongoing fusion of information integrated from hundreds of large sky surveys and tens of thousands of research publications. The contents and services span the entire observed spectrum from gamma rays through radio frequencies. As new observations are published, they are cross- identified or statistically associated with previous data and integrated into a unified database to simplify queries and retrieval. Seamless connectivity is also provided to data in NASA astrophysics mission archives (IRSA, HEASARC, MAST), to the astrophysics literature via ADS, and to other data centers around the world.

HUGO Gene Nomenclature Committee

HGNC

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The HUGO Gene Nomenclature Committee (HGNC) assigned unique gene symbols and names to over 35,000 human loci, of which around 19,000 are protein coding. This curated online repository of HGNC-approved gene nomenclature and associated resources includes links to genomic, proteomic and phenotypic information, as well as dedicated gene family pages.

WorldWide Antimalarial Resistance Network

WWARN

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The WorldWide Antimalarial Resistance Network (WWARN) is a collaborative platform generating innovative resources and reliable evidence to inform the malaria community on the factors affecting the efficacy of antimalarial medicines. Access to data is provided through diverse Tools and Resources: WWARN Explorer, Molecular Surveyor K13 Methodology, Molecular Surveyor pfmdr1 & pfcrt, Molecular Surveyor dhfr & dhps.

CHIANTI

An Atomic Database for Spectroscopic Diagnostics of Astrophysical Plasmas

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CHIANTI consists of a critically evaluated set of up-to-date atomic data, together with user-friendly programs written in Interactive Data Language (IDL) and Python to calculate the spectra from astrophysical plasmas.

NCBI Protein Clusters

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The Entrez Protein Clusters database contains annotation information, publications, structures and analysis tools for related protein sequences encoded by complete genomes. The data available in the Protein Clusters Database is generated from prokaryotic genomic studies and is intended to assist researchers studying micro-organism evolution as well as other biological sciences. Available genomes include plants and viruses as well as organelles and microbial genomes.

U.S. Energy Information Administration

EIA

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The U.S. Energy Information Administration (EIA) collects, analyzes, and disseminates independent and impartial energy information to promote sound policymaking, efficient markets, and public understanding of energy and its interaction with the economy and the environment.

MCHF/MCDHF Database

Multiconfiguration Hartree-Fock and Multiconfiguration Dirac-Hartree-Focbasek Data

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The MCHF/MCDHF database contains collections of transition data from different relativistic theories by different computational methods. For a few collections the Landé gJ factor is provided.

cisRED

Databases of genome-wide regulatory module and element predictions

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<<<!!!<<< This repository is no longer available. >>>!!!>>>

Plasma Physics Data Center

Centre de Données de la Physique de Plasma

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The CDPP is the French national data centre for natural plasmas of the solar system. The CDPP assures the long term preservation of data obtained primarily from instruments built using French resources, and renders them readily accessible and exploitable by the international community. The CDPP also provides services to enable on-line data analysis (AMDA), 3D data visualization in context (3DView), and a propagation tool which bridges solar perturbations to in-situ measurements. The CDPP is involved in the development of interoperability, participates in several Virtual Observatory projects, and supports data distribution for scientific missions (Solar Orbiter, JUICE).

MG-RAST

Metagenomics analysis server

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The MG-RAST server is an open source system for annotation and comparative analysis of metagenomes. Users can upload raw sequence data in fasta format; the sequences will be normalized and processed and summaries automatically generated. The server provides several methods to access the different data types, including phylogenetic and metabolic reconstructions, and the ability to compare the metabolism and annotations of one or more metagenomes and genomes. In addition, the server offers a comprehensive search capability. Access to the data is password protected, and all data generated by the automated pipeline is available for download in a variety of common formats. MG-RAST has become an unofficial repository for metagenomic data, providing a means to make your data public so that it is available for download and viewing of the analysis without registration, as well as a static link that you can use in publications. It also requires that you include experimental metadata about your sample when it is made public to increase the usefulness to the community.

NCBI Genome

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<<<!!!<<< Effective May 2024, NCBI's Genome resource will no longer be available. NCBI Genome data can now be found on the NCBI Datasets taxonomy pages. https://www.re3data.org/repository/r3d100014298 >>>!!!>>> The Genome database contains annotations and analysis of eukaryotic and prokaryotic genomes, as well as tools that allow users to compare genomes and gene sequences from humans, microbes, plants, viruses and organelles. Users can browse by organism, and view genome maps and protein clusters.

ORegAnno

Open regulatory annotation database

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<<<!!!<<< 2017-06-02: We recently suffered a server failure and are working to bring the full ORegAnno website back online. In the meantime, you may download the complete database here: http://www.oreganno.org/dump/ ; Data are also available through UCSC Genome Browser (e.g., hg38 -> Regulation -> ORegAnno) https://genome.ucsc.edu/cgi-bin/hgTrackUi?hgsid=686342163_2it3aVMQVoXWn0wuCjkNOVX39wxy&c=chr1&g=oreganno >>>!!!>>> The Open REGulatory ANNOtation database (ORegAnno) is an open database for the curation of known regulatory elements from scientific literature. Annotation is collected from users worldwide for various biological assays and is automatically cross-referenced against PubMED, Entrez Gene, EnsEMBL, dbSNP, the eVOC: Cell type ontology, and the Taxonomy database, where appropriate, with information regarding the original experimentation performed (evidence). ORegAnno further provides an open validation process for all regulatory annotation in the public domain. Assigned validators receive notification of new records in the database and are able to cross-reference the citation to ensure record integrity. Validators have the ability to modify any record (deprecating the old record and creating a new one) if an error is found. Further, any contributor to the database can comment on any annotation by marking errors, or adding special reports into function as they see fit. These features of ORegAnno ensure that the collection is of the highest quality and uniquely provides a dynamic view of our changing understanding of gene regulation in the various genomes.

Academic Torrents

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Academic Torrents is a distributed data repository. The academic torrents network is built for researchers, by researchers. Its distributed peer-to-peer library system automatically replicates your datasets on many servers, so you don't have to worry about managing your own servers or file availability. Everyone who has data becomes a mirror for those data so the system is fault-tolerant.

Tropical Cyclone Information System

JPL Tropical Cyclone Information System

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The JPL Tropical Cyclone Information System (TCIS) was developed to support hurricane research. There are three components to TCIS; a global archive of multi-satellite hurricane observations 1999-2010 (Tropical Cyclone Data Archive), North Atlantic Hurricane Watch and ASA Convective Processes Experiment (CPEX) aircraft campaign. Together, data and visualizations from the real time system and data archive can be used to study hurricane process, validate and improve models, and assist in developing new algorithms and data assimilation techniques.

HDAP

Heidelberg Digitized Astronomical Plates

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Scans of plates obtained at Landessternwarte Heidelberg-Königstuhl and German-Spanish Astronomical Center (Calar Alto Observatory), Spain, 1900 through 1999.

SeaDataNet

Pan-European Infrastructure for ocean & marine data management

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SeaDataNet is a standardized system for managing the large and diverse data sets collected by the oceanographic fleets and the automatic observation systems. The SeaDataNet infrastructure network and enhance the currently existing infrastructures, which are the national oceanographic data centres of 35 countries, active in data collection. The networking of these professional data centres, in a unique virtual data management system provide integrated data sets of standardized quality on-line. As a research infrastructure, SeaDataNet contributes to build research excellence in Europe.

European Union Open Data Portal

EU Open Data Portal

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The European Union Open Data Portal is the single point of access to a growing range of data from the institutions and other bodies of the European Union (EU). Data are free for you to use and reuse for commercial or non-commercial purposes. By providing easy and free access to data, the portal aims to promote their innovative use and unleash their economic potential. It also aims to help foster the transparency and the accountability of the institutions and other bodies of the EU. The EU Open Data Portal is managed by the Publications Office of the European Union. Implementation of the EU's open data policy is the responsibility of the Directorate-General for Communications Networks, Content and Technology of the European Commission.

Open PHACTS

Open Pharmacological Space

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<<<!!!<<< The Open PHACTS Linked Data API and associated infrastructure was closed down in March 2019 to allow the team to focus on the next phase. http://www.openphactsfoundation.org/open-phacts-platform-update-march-2019/ >>>!!!>>>

MetaCyc

Metabolic Pathway Database

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MetaCyc is a curated database of experimentally elucidated metabolic pathways from all domains of life. MetaCyc contains pathways involved in both primary and secondary metabolism, as well as associated metabolites, reactions, enzymes, and genes. The goal of MetaCyc is to catalog the universe of metabolism by storing a representative sample of each experimentally elucidated pathway. MetaCyc applications include: Online encyclopedia of metabolism, Prediction of metabolic pathways in sequenced genomes, Support metabolic engineering via enzyme database, Metabolite database aids. metabolomics research.

International Laser Ranging Service

ILRS

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The International Laser Ranging Service (ILRS) provides global satellite and lunar laser ranging data and their related products to support geodetic and geophysical research activities as well as IERS products important to the maintenance of an accurate International Terrestrial Reference Frame (ITRF). The service develops the necessary global standards/specifications and encourages international adherence to its conventions. The ILRS is one of the space geodetic services of the International Association of Geodesy (IAG). The ILRS collects, merges, archives and distributes Satellite Laser Ranging (SLR) and Lunar Laser Ranging (LLR) observation data sets of sufficient accuracy to satisfy the objectives of a wide range of scientific, engineering, and operational applications and experimentation.

megx.net

Marine Ecological GenomiX

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<<<!!!<<< This repository is no longer open to the public !!! >>>!!!>>>

DATA.GOV.UK

Opening up Government

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The Government is releasing public data to help people understand how government works and how policies are made. Some of this data is already available, but data.gov.uk brings it together in one searchable website. Making this data easily available means it will be easier for people to make decisions and suggestions about government policies based on detailed information.

International Network of Nuclear Reaction Data Centres

NRDC

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The International Network of Nuclear Reaction Data Centres (NRDC) constitutes a worldwide cooperation of nuclear data centres under the auspices of the International Atomic Energy Agency. The Network was established to coordinate the world-wide collection, compilation and dissemination of nuclear reaction data.