Filter
Reset all

Subjects

Content Types

Countries

AID systems

API

Certificates

Data access

Data access restrictions

Database access

Database licenses

Data licenses

Data upload

Data upload restrictions

Enhanced publication

Institution responsibility type

Institution type

Keywords

Metadata standards

PID systems

Provider types

Quality management

Repository languages

Software

Syndications

Repository types

Versioning

  • * at the end of a keyword allows wildcard searches
  • " quotes can be used for searching phrases
  • + represents an AND search (default)
  • | represents an OR search
  • - represents a NOT operation
  • ( and ) implies priority
  • ~N after a word specifies the desired edit distance (fuzziness)
  • ~N after a phrase specifies the desired slop amount
Found 121 result(s)

PATRIC

Pathosystems Resource Integration Center

Subject(s)
Content type(s)
Country
<<<!!!<<< This repository is no longer available. >>>!!!>>> PATRIC will go offline by mid-December2022. Here is what you need to know. As announced previously, PATRIC, the bacterial BRC, and IRD / ViPR, the viral BRCs, are being merged into the new Bacterial and Viral Bioinformatics Resource Center (BV-BRC). BV-BRC combines the data, tools, and technologies from these BRCs to provide an integrated resource for bacterial and viral genomics-based infectious disease research.

Global Precipitation Climatology Centre

GPCC

Subject(s)
Content type(s)
Country
The Global Precipitation Climatology Centre (GPCC) provides global precipitation analyses for monitoring and research of the earth's climate. The centre is a German contribution to the World Climate Research Programme (WCRP) and to the Global Climate Observing System (GCOS).

Incorporated Research Institutions for Seismology

IRIS

Subject(s)
Content type(s)
Country
IRIS offers free and open access to a comprehensive data store of raw geophysical time-series data collected from a large variety of sensors, courtesy of a vast array of US and International scientific networks, including seismometers (permanent and temporary), tilt and strain meters, infrasound, temperature, atmospheric pressure and gravimeters, to support basic research aimed at imaging the Earth's interior.

China National GeneBank DataBase

国家基因库生命大数据平台

Subject(s)
Content type(s)
Country
The China National GeneBank database (CNGBdb) is a unified platform for biological big data sharing and application services. CNGBdb has now integrated a large amount of internal and external biological data from resources such as CNGB, NCBI, and the EBI. There are several sub-databases in CNGBdb, including literature, variation, gene, genome, protein, sequence, organism, project, sample, experiment, run, and assembly. Based on underlying big data and cloud computing technologies, it provides various data services, including archive, analysis, knowledge search, and management authorization of biological data. CNGBdb adopts data structures and standards of international omics, health, and medicine, such as The International Nucleotide Sequence Database Collaboration (INSDC), The Global Alliance for Genomics and Health GA4GH (GA4GH), Global Genome Biodiversity Network (GGBN), American College of Medical Genetics and Genomics (ACMG), and constructs standardized data and structures with wide compatibility. All public data and services provided by CNGBdb are freely available to all users worldwide. CNGB Sequence Archive (CNSA) is the bionomics data repository of CNGBdb. CNGB Sequence Archive (CNSA) is a convenient and efficient archiving system of multi-omics data in life science, which provides archiving services for raw sequencing reads and further analyzed results. CNSA follows the international data standards for omics data, and supports online and batch submission of multiple data types such as Project, Sample, Experiment/Run, Assembly, Variation, Metabolism, Single cell, and Sequence. Moreover, CNSA has achieved the correlation of sample entities, sample information, and analyzed data on some projects. Its data submission service can be used as a supplement to the literature publishing process to support early data sharing.CNGB Sequence Archive (CNSA) is a convenient and efficient archiving system of multi-omics data in the life science of CNGBdb, which provides archiving services for raw sequencing reads and further analyzed results. CNSA follows the international data standards for omics data, and supports online and batch submission of multiple data types such as Project, Sample, Experiment/Run, Assembly, Variation, Metabolism, Single cell, Sequence. Its data submission service can be used as a supplement to the literature publishing process to support early data sharing.

OASIS

Open Access Series of Imaging Studies

Subject(s)
Content type(s)
Country
OASIS-3 is the latest release in the Open Access Series of Imaging Studies (OASIS) that aimed at making neuroimaging datasets freely available to the scientific community. By compiling and freely distributing this multi-modal dataset, we hope to facilitate future discoveries in basic and clinical neuroscience. Previously released data for OASIS-Cross-sectional (Marcus et al, 2007) and OASIS-Longitudinal (Marcus et al, 2010) have been utilized for hypothesis driven data analyses, development of neuroanatomical atlases, and development of segmentation algorithms. OASIS-3 is a longitudinal neuroimaging, clinical, cognitive, and biomarker dataset for normal aging and Alzheimer’s Disease. The OASIS datasets hosted by central.xnat.org provide the community with open access to a significant database of neuroimaging and processed imaging data across a broad demographic, cognitive, and genetic spectrum an easily accessible platform for use in neuroimaging, clinical, and cognitive research on normal aging and cognitive decline. All data is available via www.oasis-brains.org.

Biological Magnetic Resonance Data Bank

BMRB

Subject(s)
Content type(s)
Country
BioMagResBank (BMRB) is the publicly-accessible depository for NMR results from peptides, proteins, and nucleic acids recognized by the International Society of Magnetic Resonance and by the IUPAC-IUBMB-IUPAB Inter-Union Task Group on the Standardization of Data Bases of Protein and Nucleic Acid Structures Determined by NMR Spectroscopy. In addition, BMRB provides reference information and maintains a collection of NMR pulse sequences and computer software for biomolecular NMR

Remote Sensing Systems

RSS

Subject(s)
Content type(s)
Country
Remote Sensing Systems is a world leader in processing and analyzing microwave data from satellite microwave sensors. We specialize in algorithm development, instrument calibration, ocean product development, and product validation. We have worked with more than 30 satellite microwave radiometer, sounder, and scatterometer instruments over the past 40 years. Currently, we operationally produce satellite retrievals for SSMIS, AMSR2, WindSat, and ASCAT. The geophysical retrievals obtained from these sensors are made available in near-real-time (NRT) to the global scientific community and general public via FTP and this web site.

NOAA National Centers for Environmental Information - formerly: National Oceanographic Data Center

NODC

Subject(s)
Content type(s)
Country
<<<!!!<<< The demand for high-value environmental data and information has dramatically increased in recent years. To improve our ability to meet that demand, NOAA’s former three data centers—the National Climatic Data Center, the National Geophysical Data Center, and the National Oceanographic Data Center, which includes the National Coastal Data Development Center—have merged into the National Centers for Environmental Information (NCEI). >>>!!!>>> The National Oceanographic Data Center includes the National Coastal Data Development Center (NCDDC) and the NOAA Central Library, which are integrated to provide access to the world's most comprehensive sources of marine environmental data and information. NODC maintains and updates a national ocean archive with environmental data acquired from domestic and foreign activities and produces products and research from these data which help monitor global environmental changes. These data include physical, biological and chemical measurements derived from in situ oceanographic observations, satellite remote sensing of the oceans, and ocean model simulations.

Database of Genomic Variants

DGV

Subject(s)
Content type(s)
Country
The objective of the Database of Genomic Variants is to provide a comprehensive summary of structural variation in the human genome. We define structural variation as genomic alterations that involve segments of DNA that are larger than >1kb. Now we also annotate InDels in 100bp-1kb range. The content of the database is only representing structural variation identified in healthy control samples. The Database of Genomic Variants provides a useful catalog of control data for studies aiming to correlate genomic variation with phenotypic data. The database is continuously updated with new data from peer reviewed research studies. We always welcome suggestions and comments regarding the database from the research community.

MEROPS

Subject(s)
Content type(s)
Country
The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them.

ALEXA

ALEXA-A

Subject(s)
Content type(s)
Country
ALEXA is a microarray design platform for 'alternative expression analysis'. This platform facilitates the design of expression arrays for analysis of mRNA isoforms generated from a single locus by the use of alternative transcription initiation, splicing and polyadenylation sites. We use the term 'ALEXA' to describe a collection of novel genomic methods for 'alternative expression' analysis. 'Alternative expression' refers to the identification and quantification of alternative mRNA transcripts produced by alternative transcript initiation, alternative splicing and alternative polyadenylation. This website provides supplementary materials, source code and other downloads for recent publications describing our studies of alternative expression (AE). Most recently we have developed a method, 'ALEXA-Seq' and associated resources for alternative expression analysis by massively parallel RNA sequencing.

NASA Space Science Data Coordinated Archive

NSSDCA

Subject(s)
Content type(s)
Country
The NASA Space Science Data Coordinated Archive serves as the permanent archive for NASA space science mission data. "Space science" means astronomy and astrophysics, solar and space plasma physics, and planetary and lunar science. As permanent archive, NSSDCA teams with NASA's discipline-specific space science "active archives" which provide access to data to researchers and, in some cases, to the general public. NSSDCA also serves as NASA's permanent archive for space physics mission data. It provides access to several geophysical models and to data from some non-NASA mission data. In addition to supporting active space physics and astrophysics researchers, NSSDCA also supports the general public both via several public-interest web-based services (e.g., the Photo Gallery) and via the offline mailing of CD-ROMs, photoprints, and other items.

British Antarctic Survey

BAS

Subject(s)
Content type(s)
Country
British Antarctic Survey (BAS) has, for over 60 years, undertaken the majority of Britain's scientific research on and around the Antarctic continent. Atmospheric, biosphere, cryosphere, geosphere, hydrosphere, and Sun-Earth interactions metadata and data are available. Geographic information and collections are highlighted as well. Information and mapping services include a Discovery Metadata System, Data Access System, the Antarctic Digital Database (ADD), Geophysics Data Portal (BAS-GDP), ICEMAR, a fossil database, and the Antarctic Plant Database.

NCBI Taxonomy

Entrez Taxonomy

Subject(s)
Content type(s)
Country
The NCBI Taxonomy database is a curated set of names and classifications for all of the organisms that are represented in GenBank. The EMBL and DDBJ databases, as well as GenBank, now use the NCBI Taxonomy as the standard classification for nucleotide sequences. Taxonomy Contains the names and phylogenetic lineages of more than 160,000 organisms that have molecular data in the NCBI databases. New taxa are added to the Taxonomy database as data are deposited for them. When new sequences are submitted to GenBank, the submission is checked for new organism names, which are then classified and added to the Taxonomy database.

World Data Centre for Geomagnetism, Edinburgh

WDC for Geomag

Subject(s)
Content type(s)
Country
The WDC Geomagnetism, Edinburgh has a comprehensive set of digital geomagnetic data as well as indices of geomagnetic activity supplied from a worldwide network of magnetic observatories. The data and services at the WDC are available for scientific use without restrictions.

United States Census Bureau

U.S.Census Bureau

Subject(s)
Content type(s)
Country
The United States Census Bureau (officially the Bureau of the Census, as defined in Title 13 U.S.C. § 11) is the government agency that is responsible for the United States Census. It also gathers other national demographic and economic data. As a part of the United States Department of Commerce, the Census Bureau serves as a leading source of data about America's people and economy. The most visible role of the Census Bureau is to perform the official decennial (every 10 years) count of people living in the U.S. The most important result is the reallocation of the number of seats each state is allowed in the House of Representatives, but the results also affect a range of government programs received by each state. The agency director is a political appointee selected by the President of the United States.

InterPro

protein sequence analysis & classification

Subject(s)
Content type(s)
Country
InterPro collects information about protein sequence analysis and classification, providing access to a database of predictive protein signatures used for the classification and automatic annotation of proteins and genomes. Sequences in InterPro are classified at superfamily, family, and subfamily. InterPro predicts the occurrence of functional domains, repeats, and important sites, and adds in-depth annotation such as GO terms to the protein signatures.

THEMIS

Acceleration, Reconnection, Turbulence and Electrodynamics of the Moon’s Interaction with the Sun

Subject(s)
Content type(s)
Country
The THEMIS mission is a five-satellite Explorer mission whose primary objective is to understand the onset and macroscale evolution of magnetospheric substorms. The five small satellites were launched together on a Delta II rocket and they carry identical sets of instruments including an electric field instrument (EFI), a flux gate magnetometer (FGM), a search coil magnetometer (SCM), a electro-static analyzer, and solid state telescopes (SST). The mission consists of several phases. In the first phase, the spacecraft will all orbit as a tight cluster in the same orbital plane with apogee at 15.4 Earth radii (RE). In the second phase, also called the Dawn Phase, the satellites will be placed in their orbits and during this time their apogees will be on the dawn side of the magnetosphere. During the third phase (also known as the Tail Science Phase) the apogees will be in the magnetotail. The fourth phase is called the Dusk Phase or Radiation Belt Science Phase, with all apogees on the dusk side. In the fifth and final phase, the apogees will shift to the sunward side (Dayside Science Phase). The satellite data will be combined with observations of the aurora from a network of 20 ground observatories across the North American continent. The THEMIS-B (THEMIS-P1) and THEMIS-C (THEMIS-P2) were repurposed to study the lunar environment in 2009. The spacecraft were renamed ARTEMIS (Acceleration, Reconnection, Turbulence and Electrodynamics of the Moon’s Interaction with the Sun), with the P1 and P2 designations maintained.

PRoteomics IDEntifications Database

PRIDE

Subject(s)
Content type(s)
Country
The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository for proteomics data, including protein and peptide identifications, post-translational modifications and supporting spectral evidence. PRIDE encourages and welcomes direct user submissions of mass spectrometry data to be published in peer-reviewed publications.

R. L. Kurucz atomic linelist

CD-ROM 18 and CD-ROM 23

Subject(s)
Content type(s)
Country
This facility permits selective searches of some atomic data files compiled by R. L. Kurucz (Harvard-Smithsonian Center for Astrophysics). The data provided are: - vacuum wavelength (in nm) [above 200 nm calculated using Edlen, Metrologia, Vol. 2, No. 2, 1966]- air wavelength (in nm) above 200 nm- log(gf), - E [in cm-1], j, parity, and configuration for the levels (lower, upper), - information regarding the source of the data. CD-ROM 18 contains the spectrum synthesis programs ATLAS7V, SYNTHE, SPECTRV, ROTATE, BROADEN, PLOTSYN, etc. and sample runs found in directory PROGRAMS; Atomic line data files BELLHEAVY.DAT, BELLLIGHT.DAT, GFIRONLAB.DAT, GULLIVER.DAT, NLTELINES.DAT, GFIRONQ.DAT, obsolete, merged into GFALL, found in directory LINELISTS: Molecular line data files C2AX.ASC, C2BA.ASC, C2DA.ASC, C2EA.ASC, CNAX.ASC, CNBX.ASC, COAX.ASC, COXX.ASC, H2.ASC, HYDRIDES.ASC, SIOAX.ASC, SIOEX.ASC, SIOXX.ASC, found in directory LINELISTS; and my solar flux atlas for test calculations SOLARFLUX.ASC.

UCSC Genome Browser

University of California Santa Cruz Genome Bioinformatics

Subject(s)
Content type(s)
Country
It is an interactive website offering access to genome sequence data from a variety of vertebrate and invertebrate species and major model organisms, integrated with a large collection of aligned annotations. The Browser is a graphical viewer optimized to support fast interactive performance and is an open-source, web-based tool suite built on top of a MySQL database for rapid visualization, examination, and querying of the data at many levels.