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Found 10 result(s)

AmoebaDB

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AmoebaDB belongs to the EuPathDB family of databases and is an integrated genomic and functional genomic database for Entamoeba and Acanthamoeba parasites. In its first iteration (released in early 2010), AmoebaDB contains the genomes of three Entamoeba species (see below). AmoebaDB integrates whole genome sequence and annotation and will rapidly expand to include experimental data and environmental isolate sequences provided by community researchers . The database includes supplemental bioinformatics analyses and a web interface for data-mining.

ToxoDB

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ToxoDB is a genome database for the genus Toxoplasma, a set of single-celled eukaryotic pathogens that cause human and animal diseases, including toxoplasmosis.

GiardiaDB

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Giardia lamblia is a significant, environmentally transmitted, human pathogen and an amitochondriate protist. It is a major contributor to the enormous worldwide burden of human diarrheal diseases, yet the basic biology of this parasite is not well understood. No virulence factor has been identified. The Giardia lamblia genome contains only 12 million base pairs distributed onto five chromosomes. Its analysis promises to provide insights about the origins of nuclear genome organization, the metabolic pathways used by parasitic protists, and the cellular biology of host interaction and avoidance of host immune systems. Since the divergence of Giardia lamblia lies close to the transition between eukaryotes and prokaryotes in universal ribosomal RNA phylogenies, it is a valuable, if not unique, model for gaining basic insights into genetic innovations that led to formation of eukaryotic cells. In evolutionary terms, the divergence of this organism is at least twice as ancient as the common ancestor for yeast and man. A detailed study of its genome will provide insights into an early evolutionary stage of eukaryotic chromosome organization as well as other aspects of the prokaryotic / eukaryotic divergence.

MicrosporidiaDB

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MicrosporidiaDB belongs to the EuPathDB family of databases and is an integrated genomic and functional genomic database for the phylum Microsporidia. In its first iteration (released in early 2010), MicrosporidiaDB contains the genomes of two Encephalitozoon species (see below). MicrosporidiaDB integrates whole genome sequence and annotation and will rapidly expand to include experimental data and environmental isolate sequences provided by community researchers. The database includes supplemental bioinformatics analyses and a web interface for data-mining.

CryptoDB

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CryptoDB is an integrated genomic and functional genomic database for the parasite Cryptosporidium and other related genera. CryptoDB integrates whole genome sequence and annotation along with experimental data and environmental isolate sequences provided by community researchers. The database includes supplemental bioinformatics analyses and a web interface for data-mining.

PlasmoDB

Plasmodium Genomics Resource

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PlasmoDB is a genome database for the genus Plasmodium, a set of single-celled eukaryotic pathogens that cause human and animal diseases, including malaria.

PiroplasmaDB

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A genome database for the genus Piroplasma. PiroplasmaDB is a member of pathogen-databases that are housed under the NIAID-funded EuPathDB Bioinformatics Resource Center (BRC) umbrella.

Deep Carbon Observatory Data Portal

DCO-VIVO

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The Deep Carbon Observatory (DCO) is a global community of multi-disciplinary scientists unlocking the inner secrets of Earth through investigations into life, energy, and the fundamentally unique chemistry of carbon. Deep Carbon Observatory Digital Object Registry (“DCO-VIVO”) is a centrally-managed digital object identification, object registration and metadata management service for the DCO. Digital object registration includes DCO-ID generation based on the global Handle System infrastructure and metadata collection using VIVO. Users will be able to deposit their data into the DCO Data Repository and have that data discoverable and accessible by others.

Etsin Research Data Finder

Etsin - tutkimusaineistojen hakupalvelu

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Etsin is a research data finder that contains descriptive information – that is, metadata – on research datasets. In the service you can search and find data from various fields of research. A researcher, research group or organisation can use Etsin to publish information on their datasets and offer them for wider use. The metadata contained in Etsin makes it easy for anyone to discover the datasets. Etsin assigns a permanent URN identifier to datasets, making it possible to link to the dataset and gather merit through its publication and use. The metadata enables users to search for datasets and evaluate the potential for reuse. Etsin includes a description of the dataset, keywords and various dataset identifiers. The dataset information includes, for example, its subject, language, author, owner and how it is licensed for reuse. Good description of data plays an important role in its discoverability and visibility. Etsin encourages comprehensive descriptions by adapting a common set of discipline independent metadata fields and by making it easy to enter metadata. Etsin only collects metadata on datasets, not the data themselves. Anyone may browse and read the metadata. Etsin can be used with a browser or through an open interface (API). The service is discipline independent and free to use. Etsin is a service provided by the Ministry of Education and Culture to actors in the Finnish research system. The service is produced by CSC – IT Center for Science (CSC). Customer service contacts and feedback is available through servicedesk@csc.fi. The service maintenance window is on the fourth Monday of every month between 4 and 6 PM (EET). During that time, the service will be out of use.

TrichDB

Trichomonas vaginalis Sequence Database

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TrichDB integrated genomic resources for the eukaryotic protist pathogens Trichomonas vaginalis.