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Found 4 result(s)

BAliBASE

Benchmark Alignment dataBASE

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A collection of high quality multiple sequence alignments for objective, comparative studies of alignment algorithms. The alignments are constructed based on 3D structure superposition and manually refined to ensure alignment of important functional residues. A number of subsets are defined covering many of the most important problems encountered when aligning real sets of proteins. It is specifically designed to serve as an evaluation resource to address all the problems encountered when aligning complete sequences. The first release provided sets of reference alignments dealing with the problems of high variability, unequal repartition and large N/C-terminal extensions and internal insertions. Version 2.0 of the database incorporates three new reference sets of alignments containing structural repeats, trans-membrane sequences and circular permutations to evaluate the accuracy of detection/prediction and alignment of these complex sequences. Within the resource, users can look at a list of all the alignments, download the whole database by ftp, get the "c" program to compare a test alignment with the BAliBASE reference (The source code for the program is freely available), or look at the results of a comparison study of several multiple alignment programs, using BAliBASE reference sets.

Open-source Scientific Software and Service Repository

OSSR

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The ESCAPE Open-source Scientific Software and Service Repository (OSSR) is a sustainable open-access repository to share scientific software, services and datasets to the astro-particle-physics-related communities and enable open science. It is built as a curated Zenodo community (https://zenodo.org/communities/escape2020) integrated with several tools to enable a complete software life-cycle. The ESCAPE Zenodo community welcomes entries that support the software and service projects in the OSSR such as user-support documentation, tutorials, presentations and training activities. It also encourages the archival of documents and material that disseminate and support the goals of ESCAPE.

NEA Data Bank Computer Program Services

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The Data Bank operates a computer program service related to nuclear energy applications. The software library collects programs, compiles and verifies them in an appropriate computer environment, ensuring that the computer program package is complete and adequately documented. This collection of material contains more than 2000 documented packages and group cross-section data sets. We distribute these codes on CD-ROM, DVD and via electronic transfer to about 900 nominated NEA Data Bank establishments (see the rules for requesters). Standard software verification procedures are used following an ANSI/ANS standard.

Software Heritage Archive

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The long term goal of the Software Heritage initiative is to collect all publicly available software in source code form together with its development history, replicate it massively to ensure its preservation, and share it with everyone who needs it. The Software Heritage archive is growing over time as we crawl new source code from software projects and development forges.