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Found 58 result(s)

PubChem

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Pubchem contains 3 databases. 1. PubChem BioAssay: The PubChem BioAssay Database contains bioactivity screens of chemical substances described in PubChem Substance. It provides searchable descriptions of each bioassay, including descriptions of the conditions and readouts specific to that screening procedure. 2. PubChem Compound: The PubChem Compound Database contains validated chemical depiction information provided to describe substances in PubChem Substance. Structures stored within PubChem Compounds are pre-clustered and cross-referenced by identity and similarity groups. 3. PubChem Substance. The PubChem Substance Database contains descriptions of samples, from a variety of sources, and links to biological screening results that are available in PubChem BioAssay. If the chemical contents of a sample are known, the description includes links to PubChem Compound.

Human protein-protein interaction network database search

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<<<!!!<<< This repository is no longer available. >>>!!!>>> A human interactome map. The sequencing of the human genome has provided a surprisingly small number of genes, indicating that the complex organization of life is not reflected in the gene number but, rather, in the gene products – that is, in the proteins. These macromolecules regulate the vast majority of cellular processes by their ability to communicate with each other and to assemble into larger functional units. Therefore, the systematic analysis of protein-protein interactions is fundamental for the understanding of protein function, cellular processes and, ultimately, the complexity of life. Moreover, interactome maps are particularly needed to link new proteins to disease pathways and the identification of novel drug targets.

Health Atlas

Leipzig Health Atlas

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The Health Atlas is an alliance of medical ontologists, medical systems biologists and clinical trials groups to design and implement a multi-functional and quality-assured atlas. It provides models, data and metadata on specific use cases from medical research projects from the partner institutions.

Bach digital

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The Bach portal is a database for researchers and practical musicians interested in Johann Sebastian Bach and the whole Bach family. It contains detailed, fully searchable findings from research into Bach and high-resolution scans of works and sources.

Faces Of Fungi database

FoF

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This database host for fungi data related to new classification with morphology, molecular and other important data. This fungal database allows deposition of taxonomic data, phenotypic details and other useful data, which will enhance our current taxonomic understanding and ultimately enable mycologists to gain better and updated insights into the current fungal classification system. In addition, the database will also allow access to comprehensive metadata including descriptions of voucher and type specimens.

EBiSC catalogue

European Bank for induced pluripotent Stem Cells catalogue

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The EBiSC Catalogue is a collection of human iPS cells being made available to academic and commercial researchers for use in disease modelling and other forms of preclinical research. The initial collection has been generated from a wide range of donors representing specific disease backgrounds and healthy controls. As the collection grows, more isogenic control lines will become available which will add further to the collection’s appeal.

PMN

Plant Metabolic Network

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The Plant Metabolic Network (PMN) provides a broad network of plant metabolic pathway databases that contain curated information from the literature and computational analyses about the genes, enzymes, compounds, reactions, and pathways involved in primary and secondary metabolism in plants. The PMN currently houses one multi-species reference database called PlantCyc and 22 species/taxon-specific databases.

ArachnoServer

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ArachnoServer is a manually curated database containing information on the sequence, three-dimensional structure, and biological activity of protein toxins derived from spider venom. Spiders are the largest group of venomous animals and they are predicted to contain by far the largest number of pharmacologically active peptide toxins (Escoubas et al., 2006). ArachnoServer has been custom-built so that a wide range of biological scientists, including neuroscientists, pharmacologists, and toxinologists, can readily access key data relevant to their discipline without being overwhelmed by extraneous information.

ForestPlots.net

FP

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ForestPlots.net is a web-accessible secure repository for forest plot inventories in South America, Africa and Asia. The database includes plot geographical information; location, taxonomic information and diameter measurements of trees inside each plot; and participants in plot establishment and re-measurement, including principal investigators, field assistants, students.

GOES Space Environment Monitor

Geostationary Operational Environmental Satellites SEM

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The GOES Space Environment Monitor archive is an important component of the National Space Weather Program --a interagency program to provide timely and reliable space environment observations and forecasts. GOES satellites carry onboard a Space Environment Monitor subsystem that measures X-rays, Energetic Particles and Magnetic Field at the Spacecraft.

EDINA

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EDINA delivers online services and tools to benefit students, teachers and researchers in UK Higher and Further Education and beyond.

MultiDark Database

Multimessenger Approach for Dark Matter Detection

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<<<!!!<<< This MultiDark application is now integrated into CosmoSim (https://www.cosmosim.org/ , all data and much more is available there. The old MultiDark server is no longer available. >>>!!!>>> The MultiDark database provides results from cosmological simulations performed within the MultiDark project. This database can be queried by entering SQL statements directly into the Query Form. The access to that form and thus access to the public & private databases is password protected.

NeuroVault

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A place where researchers can publicly store and share unthresholded statistical maps, parcellations, and atlases produced by MRI and PET studies.

EarthWorks

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EarthWorks is a discovery tool for geospatial (a.k.a. GIS) data. It allows users to search and browse the GIS collections owned by Stanford University Libraries, as well as data collections from many other institutions. Data can be searched spatially, by manipulating a map; by keyword search; by selecting search limiting facets (e.g., limit to a given format type); or by combining these options.

DANDI

Distributed Archives for Neurophysiology Data Integration

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The US BRAIN Initiative archive for publishing and sharing neurophysiology data including electrophysiology, optophysiology, and behavioral time-series, and images from immunostaining experiments.

Toxics Release Inventory

TRI

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<<<!!!<<<The repository is no longer available. <<<!!!<<< TOXNET's TRI is retired. Visit TRI at EPA: https://www.epa.gov/toxics-release-inventory-tri-program >>>!!!>>> As part of a broader NLM reorganization, most of NLM's toxicology information services have been integrated into other NLM products and services.

DEIMS-SDR

Dynamic Ecological Information Management System - Site and Dataset Registry

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DEIMS-SDR (Dynamic Ecological Information Management System - Site and dataset registry) is an information management system that allows you to discover long-term ecosystem research sites around the globe, along with the data gathered at those sites and the people and networks associated with them. DEIMS-SDR describes a wide range of sites, providing a wealth of information, including each site’s location, ecosystems, facilities, parameters measured and research themes. It is also possible to access a growing number of datasets and data products associated with the sites. All sites and dataset records can be referenced using unique identifiers that are generated by DEIMS-SDR. It is possible to search for sites via keyword, predefined filters or a map search. By including accurate, up to date information in DEIMS, site managers benefit from greater visibility for their LTER site, LTSER platform and datasets, which can help attract funding to support site investments. The aim of DEIMS-SDR is to be the globally most comprehensive catalogue of environmental research and monitoring facilities, featuring foremost but not exclusively information about all LTER sites on the globe and providing that information to science, politics and the public in general.

GAVO Data Centre

German Astrophysical Virtual Observatory Data Centre

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The GAVO data centre at Zentrum für Astronomie Heidelberg publishes astronomical data of all kinds – e.g., catalogues, images, spectra, time series, simulation results – in accordance with Virtual Observatory standards, making them findable and immediately usable through popular clients like TOPCAT, Aladin, or programatically through the astropy-affiliated package pyVO or the Java library STIL. We pay particular attention to providing thorough metadata to the VO Registry in order to facilitate discovery and reuse. While we have a clear focus on data produced with German contributions, we will usually publish data of other provenance, too. See https://docs.g-vo.org/DaCHS/data_checklist.html for an overview of what resource-level metadata we ask for; contact us for further information on how to publish through the German Astronomical Virtual Observatory.

Répertoire International des Sources Musicales (RISM)

Internationales Quellenlexikon der Musik

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The Répertoire International des Sources Musicales (RISM) - International Inventory of Musical Sources - is an international, non-profit organization that aims to comprehensively document extant musical sources worldwide. These primary sources are music manuscripts or printed music editions, writings on music theory, and libretti. They are preserved in libraries, archives, churches, schools and private collections. RISM was founded in Paris in 1952 and is the largest and only international organization that documents written musical sources. RISM records what exists and where it can be found. As a result, by virtue of being cataloged in a comprehensive inventory, music traditions are protected while also being made available to musicologists and musicians alike. Such work is thus not an end in itself, but leads directly to practical applications.

Protected Planet

World Database on Protected Areas

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Protectedplanet.net combines crowd sourcing and authoritative sources to enrich and provide data for protected areas around the world. Data are provided in partnership with the World Database on Protected Areas (WDPA). The data include the location, designation type, status year, and size of the protected areas, as well as species information.

Cancer Genomics Hub

CGHub

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>>>>!!!!<<<< The Cancer Genomics Hub mission is now completed. The Cancer Genomics Hub was established in August 2011 to provide a repository to The Cancer Genome Atlas, the childhood cancer initiative Therapeutically Applicable Research to Generate Effective Treatments and the Cancer Genome Characterization Initiative. CGHub rapidly grew to be the largest database of cancer genomes in the world, storing more than 2.5 petabytes of data and serving downloads of nearly 3 petabytes per month. As the central repository for the foundational genome files, CGHub streamlined team science efforts as data became as easy to obtain as downloading from a hard drive. The convenient access to Big Data, and the collaborations that CGHub made possible, are now essential to cancer research. That work continues at the NCI's Genomic Data Commons. All files previously stored at CGHub can be found there. The Website for the Genomic Data Commons is here: https://gdc.nci.nih.gov/ >>>>!!!!<<<< The Cancer Genomics Hub (CGHub) is a secure repository for storing, cataloging, and accessing cancer genome sequences, alignments, and mutation information from the Cancer Genome Atlas (TCGA) consortium and related projects. Access to CGHub Data: All researchers using CGHub must meet the access and use criteria established by the National Institutes of Health (NIH) to ensure the privacy, security, and integrity of participant data. CGHub also hosts some publicly available data, in particular data from the Cancer Cell Line Encyclopedia. All metadata is publicly available and the catalog of metadata and associated BAMs can be explored using the CGHub Data Browser.

European Environment Agency, Datasets

EEA

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The European Environment Agency (EEA) is an agency of the European Union. Our task is to provide sound, independent information on the environment. We are a major information source for those involved in developing, adopting, implementing and evaluating environmental policy, and also the general public. Currently, the EEA has 33 member countries. EEA's mandate is: To help the Community and member countries make informed decisions about improving the environment, integrating environmental considerations into economic policies and moving towards sustainability To coordinate the European environment information and observation network (Eionet)

Critical Zone Observatories data

CZO data

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The NSF-supported Program serves the international scientific community through research, infrastructure, data, and models. We focus on how components of the Critical Zone interact, shape Earth's surface, and support life. ARCHIVED CONTENT: In December 2020, the CZO program was succeeded by the Critical Zone Collaborative Network (CZ Net) https://criticalzone.org/

Geo Big Data Open Platform

지오 빅데이터 오픈 플랫폼

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The Geo Big Data Open Platform of the Korea Institute of Geological Resources is a data-based repository that allows anyone to easily access the latest geological resource information scattered in Korea. It was established for the purpose of quickly organizing and providing domestic and foreign geological resource research information pouring out of a super-gap society to utilize the solution of national social problems and create an open science research ecosystem in the geological resource field.

WHOI Argo Program

Woods Hole Oceanographic Institution Argo Program

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The Argo observational network consists of a fleet of 3000+ profiling autonomous floats deployed by about a dozen teams worldwide. WHOI has built about 10% of the global fleet. The mission lifetime of each float is about 4 years. During a typical mission, each float reports a profile of the upper ocean every 10 days. The sensors onboard record fundamental physical properties of the ocean: temperature and conductivity (a measure of salinity) as a function of pressure. The depth range of the observed profile depends on the local stratification and the float's mechanical ability to adjust it's buoyancy. The majority of Argo floats report profiles between 1-2 km depth. At each surfacing, measurements of temperature and salinity are relayed back to shore via satellite. Telemetry is usually received every 10 days, but floats at high-latitudes which are iced-over accumulate their data and transmit the entire record the next time satellite contact is established. With current battery technology, the best performing floats last 6+ years and record over 200 profiles.