Filter
Reset all

Subjects

Content Types

Countries

AID systems

API

Certificates

Data access

Data access restrictions

Database access

Database access restrictions

Database licenses

Data licenses

Data upload

Data upload restrictions

Enhanced publication

Institution responsibility type

Institution type

Keywords

Metadata standards

PID systems

Provider types

Quality management

Repository languages

Software

Syndications

Repository types

Versioning

  • * at the end of a keyword allows wildcard searches
  • " quotes can be used for searching phrases
  • + represents an AND search (default)
  • | represents an OR search
  • - represents a NOT operation
  • ( and ) implies priority
  • ~N after a word specifies the desired edit distance (fuzziness)
  • ~N after a phrase specifies the desired slop amount
Found 33 result(s)
Country
The Human Genetic Variation Database (HGVD) aims to provide a central resource to archive and display Japanese genetic variation and association between the variation and transcription level of genes. The database currently contains genetic variations determined by exome sequencing of 1,208 individuals and genotyping data of common variations obtained from a cohort of 3,248 individuals.
The IMPC is a confederation of international mouse phenotyping projects working towards the agreed goals of the consortium: To undertake the phenotyping of 20,000 mouse mutants over a ten year period, providing the first functional annotation of a mammalian genome. Maintain and expand a world-wide consortium of institutions with capacity and expertise to produce germ line transmission of targeted knockout mutations in embryonic stem cells for 20,000 known and predicted mouse genes. Test each mutant mouse line through a broad based primary phenotyping pipeline in all the major adult organ systems and most areas of major human disease. Through this activity and employing data annotation tools, systematically aim to discover and ascribe biological function to each gene, driving new ideas and underpinning future research into biological systems; Maintain and expand collaborative “networks” with specialist phenotyping consortia or laboratories, providing standardized secondary level phenotyping that enriches the primary dataset, and end-user, project specific tertiary level phenotyping that adds value to the mammalian gene functional annotation and fosters hypothesis driven research; and Provide a centralized data centre and portal for free, unrestricted access to primary and secondary data by the scientific community, promoting sharing of data, genotype-phenotype annotation, standard operating protocols, and the development of open source data analysis tools. Members of the IMPC may include research centers, funding organizations and corporations.
Country
>>> --- !!!! Attention: Obviously the institute does not exist any more. The links do not work anymore. !!!! --- <<< Our center is devoted to: Collection, compilation, evaluation, and dissemination of scientific information required for fusion research, and Investigation of problems arising in the course of development of fusion research. There are atomic and molecular (A & M) numerical databases and bibliographic databases on plasma physics and atomic physics.
The Brain Transcriptome Database (BrainTx) project aims to create an integrated platform to visualize and analyze our original transcriptome data and publicly accessible transcriptome data related to the genetics that underlie the development, function, and dysfunction stages and states of the brain.
Country
DARTS primarily archives high-level data products obtained by JAXA's space science missions in astrophysics (X-rays, radio, infrared), solar physics, solar-terrestrial physics, and lunar and planetary science. In addition, we archive related space science data products obtained by other domestic or foreign institutes, and provide data services to facilitate use of these data.
Country
SDBS is an integrated spectral database system for organic compounds, which includes 6 different types of spectra under a directory of the compounds. The six spectra are as follows, an electron impact Mass spectrum (EI-MS), a Fourier transform infrared spectrum (FT-IR), a 1H nuclear magnetic resonance (NMR) spectrum, a 13C NMR spectrum, a laser Raman spectrum, and an electron spin resonance (ESR) spectrum.
Country
The Japanese Genotype-phenotype Archive (JGA) is a service for permanent archiving and sharing of all types of individual-level genetic and de-identified phenotypic data resulting from biomedical research projects. The JGA contains exclusive data collected from individuals whose consent agreements authorize data release only for specific research use or to bona fide researchers. Strict protocols govern how information is managed, stored and distributed by the JGA. Once processed, all data are encrypted. Users can contact the JGA team from here. JGA services are provided in collaboration with National Bioscience Database Center (NBDC) of Japan Science and Technology Agency.
Country
The Polar Data Center (PDC) manages the Science Database among other repositories for Japanese polar research. The Science Database is the destination repository for all Japanese Antarctic Research Expedition (JARE) data as well as the Japanese contribution to the International Polar Year (IPY) 2007-2008. Metadata are in English and Japanese, and metadata records are shared with the Global Change Master Directory.
PDBj (Protein Data Bank Japan) provides a centralized PDB archive of macromolecular structures, integrated tools for data retrieval, visualization, and functional characterization. PDBj is supported by JST-NBDC and Osaka University.
Country
Nobeyama Radio Polarimeters (NoRP) are observing the Sun with multiple frequencies in the microwave range. It is capable to obtain the total coming flux and the circular-polarization degree.
Country
The "Subaru Observatory Project" was originally planned for producing very important output to astronomical society by systematic time allocation and using characteristic functions of Subaru Telescope. The observation time for this project consists of guaranteed time both for telescope builders and for people responsible for telescope operation. 3 proposals were selected for execution during 2002 and 2003 fiscal years. They are Subaru Deep Field (SDF) (PI is Dr. Kashikawa at Mitaka, NAOJ), Subaru XMM-Newton Deep Survey (SXDS) (PI is Dr. Sekiguchi at Hilo, Subaru Telescope), and Disk and Planet Searches (SDPS) (PI is Dr. Hayashi at Hilo, Subaru Telescope). SOAPs web server provide the data (fully reduced images and catalogs) download obtained from SDF and SXDS projects. Raw Data are available at the SMOKA Science Archive: https://smoka.nao.ac.jp/
The Protein Data Bank (PDB) is an archive of experimentally determined three-dimensional structures of biological macromolecules that serves a global community of researchers, educators, and students. The data contained in the archive include atomic coordinates, crystallographic structure factors and NMR experimental data. Aside from coordinates, each deposition also includes the names of molecules, primary and secondary structure information, sequence database references, where appropriate, and ligand and biological assembly information, details about data collection and structure solution, and bibliographic citations. The Worldwide Protein Data Bank (wwPDB) consists of organizations that act as deposition, data processing and distribution centers for PDB data. Members are: RCSB PDB (USA), PDBe (Europe) and PDBj (Japan), and BMRB (USA). The wwPDB's mission is to maintain a single PDB archive of macromolecular structural data that is freely and publicly available to the global community.
Country
The database includes world-wide cosmic-ray neutron observations (pressure-corrected 1 hour counts) since 1953. The date are opened in two formats; one is 4096-byte "longformat" data and the other one is 80-byte "cardformat" data. Since the "cardformat" data are prepared only for quick check of data, the "longformat" data, which include information for data usage (constant, factors, etc), should be used for research works. PS files (compressed) of yearly plots are also available.
The International Ocean Discovery Program (IODP) is an international marine research collaboration that explores Earth's history and dynamics using ocean-going research platforms to recover data recorded in seafloor sediments and rocks and to monitor subseafloor environments. IODP depends on facilities funded by three platform providers with financial contributions from five additional partner agencies. Together, these entities represent 26 nations whose scientists are selected to staff IODP research expeditions conducted throughout the world's oceans. IODP expeditions are developed from hypothesis-driven science proposals aligned with the program's science plan Illuminating Earth's Past, Present, and Future. The science plan identifies 14 challenge questions in the four areas of climate change, deep life, planetary dynamics, and geohazards. Until 2013 under the name: International Ocean Drilling Program.
Content type(s)
Country
<<<!!!<<< This repository is no longer available. >>>!!!>>> Japan Space Systems (J-spacesystems) aims to contribute to the advancement of Japanese industry, space systems technology, conservation of the earth environment, utilization of the space environment, and other research and development efforts. The system provides access to data from unmanned space missions and remote sensing instruments.
DDBJ; DNA Data Bank of Japan is the sole nucleotide sequence data bank in Asia, which is officially certified to collect nucleotide sequences from researchers and to issue the internationally recognized accession number to data submitters.Since we exchange the collected data with EMBL-Bank/EBI; European Bioinformatics Institute and GenBank/NCBI; National Center for Biotechnology Information on a daily basis, the three data banks share virtually the same data at any given time. The virtually unified database is called "INSD; International Nucleotide Sequence Database DDBJ collects sequence data mainly from Japanese researchers, but of course accepts data and issue the accession number to researchers in any other countries.
Country
SMOKA provides public science data obtained at Subaru Telescope, 188cm telescope at Okayama Astrophysical Observatory, 105cm Schmidt telescope at Kiso Observatory (University of Tokyo), MITSuME, and KANATA Telescope at Higashi-Hiroshima Observatory. It is intended mainly for astronomical researchers.
Country
National Institute of Information and Communications Technology (NICT) has taken charge of the WDC for Ionosphere. WDC for Ionosphere archives ionospheric data and metadata from approximately 250 stations across the globe.
Country
The UMIN case data repository system was implemented by adding a function to the UMIN Clinical Trials Registry System. The aim of this system is to keep anonymized case data from clinical research conducted by individual researchers at the UMIN center, and to guarantee the content of the data to third parties. This system enables other researchers to inspect case data or to repeat statistical analyses
Country
The task of WDC geomagnetism is to collect geomagnetic data from all over the globe and distribute those data to researchers and data users, as a World Data Center for Geomagnetism.
MassBank is the first public repository of mass spectral data for sharing them among scientific research community. MassBank data are useful for the chemical identification and structure elucidation of chemical comounds detected by mass spectrometry.MassBank system is originally designed for public sharing of reference mass spectra for metabolite identification. It is also useful for their in-house or local sharing. Recently it finds another application; sharing mass spectra of unknown metabolites for metabolite profiling. The IPB is operating the first european MassBank site, that is part of the consortial MassBank Project. You can access both the set of IPB Tandem-MS and Ion Trap spectra, as well as the other massbank sites.