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Found 254 result(s)

Fisheries and Oceans Canada Pacific Region Data Archive

Pêches et Océans Canada Region Pacifique Cataloge de données

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The Institute of Ocean Sciences (IOS)/Ocean Sciences Division (OSD) data archive contains the holdings of oceanographic data generated by the IOS and other agencies and laboratories, including the Institute of Oceanography at the University of British Columbia and the Pacific Biological Station. The contents include data from B.C. coastal waters and inlets, B.C. continental shelf waters, open ocean North Pacific waters, Beaufort Sea and the Arctic Archipelago.

eFish

Genomic Database Repository

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The project aims to examine and index the genomic diversity through the generation of complete mitochondrial and nuclear genome sequences of sharks and rays of the Pacific Rim. There is a huge diversity of elasmobranch fishes in this region, but many species are under threat because of poor management and conservation measures in many countries. It is absolutely critical that species’ identities are correct for conservation and fisheries management purposes. This project will provide this clarity of identity for both charismatic and commercially important species through the inclusion of ‘genetypes’ (ie., BioVouchers) and the application of genetic tools that utilize whole mitochondrial and nuclear genome sequences.

TERN Data Discovery Portal

TDDP

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The TERN Data Discovery Portal (TDDP) is a gateway to search and access all the datasets published by the Australian Terrestrial Ecosystem Research Network. In the TERN data discovery portal, users can conduct textual and graphical searches on the metadata catalogue using a web interface with temporal, spatial, and eco science related controlled vocabulary keywords. Requests to download data discovered through different data services associated with TERN. Downloading, using and sharing data will be subjected to the TERN data licensing framework (https://www.tern.org.au/datalicence/).

Biological Collection Access Service for Europe

BioCASe

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The Biological Collection Access Service for Europe, BioCASE, is a transnational network of biological collections of all kinds. BioCASE enables widespread unified access to distributed and heterogeneous European collection and observational databases using open-source, system-independent software and open data standards and protocols.

B.C. Conservation Data Centre

CDC

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The British Columbia Conservation Data Centre (CDC) collects and disseminates information on plants, animals and ecosystems at risk in British Columbia. The " BC Species and Ecosystems Explorer" is a source for authoritative conservation information on approximately 7400 plants and animals, and over 600 ecological communities (ecosystems)in British Columbia. Information includes conservation status, legal designation, and ecosection values for ecological communities.

Primate Life Histories database

PLHDB

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This database contains individual-based life history data that have been collected from wild primate populations by nine working group participants over a minimum of 19 years.

NCBI Taxonomy

Entrez Taxonomy

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The NCBI Taxonomy database is a curated set of names and classifications for all of the organisms that are represented in GenBank. The EMBL and DDBJ databases, as well as GenBank, now use the NCBI Taxonomy as the standard classification for nucleotide sequences. Taxonomy Contains the names and phylogenetic lineages of more than 160,000 organisms that have molecular data in the NCBI databases. New taxa are added to the Taxonomy database as data are deposited for them. When new sequences are submitted to GenBank, the submission is checked for new organism names, which are then classified and added to the Taxonomy database.

ITIS

Integrated Taxonomic Information System

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Here you will find authoritative taxonomic information on plants, animals, fungi, and microbes of North America and the world.

Global Genome Biodiversity Network

DNA Bank Network (formerly)

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The DNA Bank Network was established in spring 2007 and was funded until 2011 by the German Research Foundation (DFG). The network was initiated by GBIF Germany (Global Biodiversity Information Facility). It offers a worldwide unique concept. DNA bank databases of all partners are linked and are accessible via a central web portal, providing DNA samples of complementary collections (microorganisms, protists, plants, algae, fungi and animals). The DNA Bank Network was one of the founders of the Global Genome Biodiversity Network (GGBN) and is fully merged with GGBN today. GGBN agreed on using the data model proposed by the DNA Bank Network. The Botanic Garden and Botanical Museum Berlin-Dahlem (BGBM) hosts the technical secretariat of GGBN and its virtual infrastructure. The main focus of the DNA Bank Network is to enhance taxonomic, systematic, genetic, conservation and evolutionary studies by providing: • high quality, long-term storage of DNA material on which molecular studies have been performed, so that results can be verified, extended, and complemented, • complete on-line documentation of each sample, including the provenance of the original material, the place of voucher deposit, information about DNA quality and extraction methodology, digital images of vouchers and links to published molecular data if available.

PlutoF

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An online data management workbench and computing service provider for biology and related disciplines.

GEISHA

Gallus Expression in Situ Hybridization Analysis

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GEISHA is the online repository of in situ hybridization and corresponding metadata for genes expressed in the chicken embryo during the first six days of development.

AmphibiaWeb

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AmphibiaWeb is an online system enabling any user to search and retrieve information relating to amphibian biology and conservation. This site was motivated by the global declines of amphibians, the study of which has been hindered by the lack of multidisplinary studies and a lack of coordination in monitoring, in field studies, and in lab studies. We hope AmphibiaWeb will encourage a shared vision to collaboratively face the challenge of global amphibian declines and the conservation of remaining amphibians and their habitats.

NCBI Protein

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The Protein database is a collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB. Protein sequences are the fundamental determinants of biological structure and function.

NCBI Nucleotide

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The NCBI Nucleotide database collects sequences from such sources as GenBank, RefSeq, TPA, and PDB. Sequences collected relate to genome, gene, and transcript sequence data, and provide a foundation for research related to the biomedical field.

SiB Colombia Portal de Datos

GBIF Colombia

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The Colombian Biodiversity Information Facility (SiB Colombia) is a national initiative established in early 2000 and coordinated by Instituto Humboldt to facilitate free and open access to biodiversity data. It comprises a network of more than 100 organizations (including universities, biological collections, research institutes, environmental authorities and NGOs among others) that work together to ensure that biodiversity data is available to support further research, education, policy making and incentive measures for the conservation and sustainable use of biodiversity. SiB Colombia’s mission is to facilitate the management of biodiversity data by bringing together users, publishers and data producers to support research, education and decision making related to knowledge, conservation and sustainable use of biodiversity and ecosystem services. SiB Colombia aims to consolidate the collaborative platform that facilitates the generation, use and democratization of knowledge on the biodiversity of Colombia. Thus, SiB Colombia contributes to a vision of a society that knows and values the biodiversity in which it is immersed, and uses such knowledge for its development.

BRC

Biological Records Centre

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The Biological Records Centre (BRC), established in 1964, is a national focus in the UK for terrestrial and freshwater species recording. BRC works closely with the voluntary recording community, principally through support of national recording schemes and societies. It provides an application, IRecord, for people to use to record and submit their own wildlife observations to the repository. Map and access datasets via the NBN Gateway, an Internet based data delivery service.

Comparative Mammalian Brain Collections

brainmuseum

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The Comparative Mammalian Brain Collection web site provides site visitors with images and information from several of the world's largest collections of well-preserved, sectioned and stained brains of mammals, principally those at the University of Wisconsin-Madison and Michigan State University. These collections are currently being consolidated into a central repository at the National Museum of Health and Medicine at the Armed Forces Institute of Pathology in Washington, DC. The collections have been a century in the making and represent the efforts of dozens of skilled scientists. Their colocation at a single facility will represent a national and international center for comparative brain study of the actual specimens. The centralized web site offers many kinds of access to the information contained in the specimens, for use by students and researchers worldwide.

Pig Expression Data Explorer

PEDE

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The Pig Expression Data Explorer (PEDE) database system stores full-length cDNA libraries of swine data accesible via keyword and ID searches. Data is publically available, and may specifically interest genetic researchers interested in disease sucsceptibly, and major and minor porcine specific antigens.

Canadas National Aquatic Biological Specimen Bank and Database

NABSB

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<<<!!!<<< ----This page has been archived on the Web--- >>>!!!>>> Environment and Climate Change Canada collects biological samples from a number of lakes and rivers across Canada in support of federally mandated programs. Environment and Climate Change Canada has collected fish and invertebrates from the Great Lakes since 1977 in support of the Great Lakes Water Quality Agreement (GLWQA). More recently, samples have been collected nationally to support Canada's Chemicals Management Plan and the Clean Air Regulatory Agenda. Environment and Climate Change Canada also maintains a specimen bank of frozen tissues which is a requirement of the GLWQA and is an integral part of departmental monitoring and research programs. The National Aquatic Biological Specimen Bank (NABSB) is located in a dedicated facility at the Canada Centre for Inland Waters in Burlington, Ontario. The NABSB holds more than 37,000 samples of fish and invertebrates collected over the last 30+ years of environmental monitoring in Canada. Research conducted using samples from the NABSB has produced more than 60 scientific publications, reports and book chapters

Alaska Ocean Observing System

AOOS

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Alaska Ocean Observing System (AOOS) provides ocean and coastal observations data. The AOOS is governed by the Integrated Ocean Observing System (IOOS) which is a partnership among federal, regional, academic and private sector groups. The Ocean Data Explorer contains scientific and management information including real-time sensor feeds, operational oceanographic and atmospheric models, satellite observations and GIS data sets that describe the biological, chemical and physical characteristics of Alaska and its surrounding waters. This map offers many new updated features that build upon the existing data system.

Ensembl Genomes

e!EnsemblGenomes

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The Ensembl genome annotation system, developed jointly by the EBI and the Wellcome Trust Sanger Institute, has been used for the annotation, analysis and display of vertebrate genomes since 2000. Since 2009, the Ensembl site has been complemented by the creation of five new sites, for bacteria, protists, fungi, plants and invertebrate metazoa, enabling users to use a single collection of (interactive and programatic) interfaces for accessing and comparing genome-scale data from species of scientific interest from across the taxonomy. In each domain, we aim to bring the integrative power of Ensembl tools for comparative analysis, data mining and visualisation across genomes of scientific interest, working in collaboration with scientific communities to improve and deepen genome annotation and interpretation.

UCSC Genome Browser

University of California Santa Cruz Genome Bioinformatics

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It is an interactive website offering access to genome sequence data from a variety of vertebrate and invertebrate species and major model organisms, integrated with a large collection of aligned annotations. The Browser is a graphical viewer optimized to support fast interactive performance and is an open-source, web-based tool suite built on top of a MySQL database for rapid visualization, examination, and querying of the data at many levels.

FaceBase

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FaceBase is a collaborative NIDCR-funded project that houses comprehensive data in support of advancing research into craniofacial development and malformation. It serves as a community resource by curating large datasets of a variety of types from the craniofacial research community and sharing them via this website. Practices emphasize a comprehensive and multidisciplinary approach to understanding the developmental processes that create the face. The data offered spotlights high-throughput genetic, molecular, biological, imaging and computational techniques. One of the missions of this project is to facilitate cooperation and collaboration between the central coordinating center (ie, the Hub) and the craniofacial research community.

Biogeographic Information and Observation System

BIOS

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BIOS is a system designed to enable the management, visualization, and analysis of biogeographic data collected by the California Department of Fish and Wildlife and its partner organizations. BIOS integrates GIS, relational database management, and ESRI's ArcGIS Server technology to create a statewide, integrated information management tool that can be used on any computer with access to the Internet.

Ensembl

e!

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The Ensembl project produces genome databases for vertebrates and other eukaryotic species. Ensembl is a joint project between the European Bioinformatics Institute (EBI) and the Wellcome Trust Sanger Institute (WTSI) to develop a software system that produces and maintains automatic annotation on selected genomes.The Ensembl project was started in 1999, some years before the draft human genome was completed. Even at that early stage it was clear that manual annotation of 3 billion base pairs of sequence would not be able to offer researchers timely access to the latest data. The goal of Ensembl was therefore to automatically annotate the genome, integrate this annotation with other available biological data and make all this publicly available via the web. Since the website's launch in July 2000, many more genomes have been added to Ensembl and the range of available data has also expanded to include comparative genomics, variation and regulatory data. Ensembl is a joint project between European Bioinformatics Institute (EBI), an outstation of the European Molecular Biology Laboratory (EMBL), and the Wellcome Trust Sanger Institute (WTSI). Both institutes are located on the Wellcome Trust Genome Campus in Hinxton, south of the city of Cambridge, United Kingdom.