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Found 106 result(s)
Open Context is a free, open access resource for the electronic publication of primary field research from archaeology and related disciplines. It emerged as a means for scholars and students to easily find and reuse content created by others, which are key to advancing research and education. Open Context's technologies focus on ease of use, open licensing frameworks, informal data integration and, most importantly, data portability.Open Context currently publishes 23 projects.
The majority of digital content in the ISPS Data Archive currently consists of social science research data from experiments, program files with the code for analyzing these data, requisite documentation to use and understand the data, and associated files. Access to the ISPS Data Archive is provided at no cost and is granted for scholarship and research purposes only.
Recode2 is a database of genes that utilize non-standard translation for gene expression purposes. Recoding events described in the database include programmed ribosomal frameshifting, translational bypassing (aka hopping) and mRNA specific codon redefinition. Frameshifting at a particular site often yields two protein products from one coding sequence and sometimes serves a regulatory purpose by acting as a sensor of the level of product protein or of some external ligand. Bypassing (hopping) allows the coupling of two ORFs separated on an mRNA by a coding gap. Codon redefinition occurs when a stop codon is decoded as a standard amino acid (often glutamine or tryptophan), or the 21st amino acid selenocysteine. These recoding events are in competition with standard decoding and are site specific. The efficiency of recoding is often modulated by cis-stimulators and sometimes by trans-factors. The sequences of the genes that use recoding for their expression are in the database. The recoding sites and the known stimulatory signals are annotated in the database together with notes on factors that are known to affect recoding efficiencies.
PDBj (Protein Data Bank Japan) provides a centralized PDB archive of macromolecular structures, integrated tools for data retrieval, visualization, and functional characterization. PDBj is supported by JST-NBDC and Osaka University.
DDBJ; DNA Data Bank of Japan is the sole nucleotide sequence data bank in Asia, which is officially certified to collect nucleotide sequences from researchers and to issue the internationally recognized accession number to data submitters.Since we exchange the collected data with EMBL-Bank/EBI; European Bioinformatics Institute and GenBank/NCBI; National Center for Biotechnology Information on a daily basis, the three data banks share virtually the same data at any given time. The virtually unified database is called "INSD; International Nucleotide Sequence Database DDBJ collects sequence data mainly from Japanese researchers, but of course accepts data and issue the accession number to researchers in any other countries.
This repository contains about 500 medieval codices and manuscripts (dated from 8th to 18th century), which were a part of the BMBF-funded project eCodicology. The collection and database contains descriptional data about the manuscripts in TEI conformant XML format as well as digitized images of every codex page.
IEDB offers easy searching of experimental data characterizing antibody and T cell epitopes studied in humans, non-human primates, and other animal species. Epitopes involved in infectious disease, allergy, autoimmunity, and transplant are included. The IEDB also hosts tools to assist in the prediction and analysis of B cell and T cell epitopes.
The European Database of Seismogenic Faults (EDSF) was compiled in the framework of the EU Project SHARE, Work Package 3, Task 3.2. EDSF includes only faults that are deemed to be capable of generating earthquakes of magnitude equal to or larger than 5.5 and aims at ensuring a homogeneous input for use in ground-shaking hazard assessment in the Euro-Mediterranean area. Several research institutions participated in this effort with the contribution of many scientists (see the Database section for a full list). The EDSF database and website are hosted and maintained by INGV.
The IPD-IMGT/HLA Database provides a specialist database for sequences of the human major histocompatibility complex (MHC) and includes the official sequences named by the WHO Nomenclature Committee For Factors of the HLA System. The IPD-IMGT/HLA Database is part of the international ImMunoGeneTics project (IMGT). The database uses the 2010 naming convention for HLA alleles in all tools herein. To aid in the adoption of the new nomenclature, all search tools can be used with both the current and pre-2010 allele designations. The pre-2010 nomenclature designations are only used where older reports or outputs have been made available for download.
The domain of the IDS repository is the German language, mainly in its current form (contemporary New High German). Its designated community are national and international researchers in German and general linguistics. As an institutional repository, the repository provides long term archival of two important IDS projects: the Deutsches Referenzkorpus (‘German Reference Corpus’, DeReKo), which curates a large corpus of written German language, and the Archiv für Gesprochenes Deutsch (‘Archive of Spoken German’, AGD), which curates several corpora of spoken German. In addition, the repository enables germanistic researchers from IDS and from other research facilities and universities to deposit their research data for long term archival of data and metadata arising from research projects.
STOREDB is a platform for the archiving and sharing of primary data and outputs of all kinds, including epidemiological and experimental data, from research on the effects of radiation. It also provides a directory of bioresources and databases containing information and materials that investigators are willing to share. STORE supports the creation of a radiation research commons.
The CyberCell database (CCDB) is a comprehensive collection of detailed enzymatic, biological, chemical, genetic, and molecular biological data about E. coli (strain K12, MG1655). It is intended to provide sufficient information and querying capacity for biologists and computer scientists to use computers or detailed mathematical models to simulate all or part of a bacterial cell at a nanoscopic (10-9 m), mesoscopic (10-8 m).The CyberCell database CCDB actually consists of 4 browsable databases: 1) the main CyberCell database (CCDB - containing gene and protein information), 2) the 3D structure database (CC3D – containing information for structural proteomics), 3) the RNA database (CCRD – containing tRNA and rRNA information), and 4) the metabolite database (CCMD – containing metabolite information). Each of these databases is accessible through hyperlinked buttons located at the top of the CCDB homepage. All CCDB sub-databases are fully web enabled, permitting a wide variety of interactive browsing, search and display operations. and microscopic (10-6 m) level.
The KPDL covers cultural heritage, scientific and regional collections – digital copies of different forms of publications: books, journals, graphics, articles, leaflets, posters, playbills, photographs, invitations, maps, exhibition catalogues and trade fairs of the region. The Kujawsko-Pomorska Digital Library is to serve scientists, students, schoolchildren and all the citizens of the region.
PHI-base is a web-accessible database that catalogues experimentally verified pathogenicity, virulence and effector genes from fungal, Oomycete and bacterial pathogens, which infect animal, plant, fungal and insect hosts. PHI-base is therfore an invaluable resource in the discovery of genes in medically and agronomically important pathogens, which may be potential targets for chemical intervention. In collaboration with the FRAC team, PHI-base also includes antifungal compounds and their target genes.
clarin:el is the Greek national network of language resources, a nation-wide Research Infrastructure devoted to the sustainable storage, sharing, dissemination and preservation of language resources. CLARIN EL infrastructure, which is a Greek nation-wide Research Infrastructure devoted to the sustainable storage, sharing, dissemination and preservation of language resources (LRs) and aims at increasing access to and augmentation of such resources at a national scale and beyond. It is an open, integrated, secure and interoperable storage, sharing and processing infrastructure for LRs (datasets, tools and processing services) for all domains domains and disciplines where language plays a critical role, notably. CLARIN EL is implemented in the framework of the CLARIN Attiki, national project in support of ESFRI/2006 Research Infrastructures.
Stats NZ (Statistics New Zealand) collects data about New Zealand’s environment, economy and society. The information helps government, local councils, Māori, businesses, communities, researchers and the public to measure, and make decisions about such things as: where we need roads, schools and hospitals, environmental progress, our quality of life, how families are doing, where to locate a business, and what products to sell. The Statistics New Zealand Data Archive is a central repository for all the important statistical datasets and associated documentation, metadata and publications that Statistics New Zealand produces. It also acts as a safe repository for datasets produced by other government agencies and government funded statistical studies. The key difference between the Statistics New Zealand Data Archive and other digital archives is that it contains primarily statistical data at unit record level. The unit record data is archived when it is no longer in regular use by its producer.
The Repository stores in digital format all the academic and scientific documentation (Theses, Articles, Papers) generated by the institution. Its main objectives are to promote open access to the scientific-technological production generated by the Institution. It is organized by collections: Thesis and Final Works, Research, Institutional History and Photographic Archive.
The Babylonian astronomical diaries comprise a group of cuneiform texts which record natural events in time spans from months to a whole year
NetPath is currently one of the largest open-source repository of human signaling pathways that is all set to become a community standard to meet the challenges in functional genomics and systems biology. Signaling networks are the key to deciphering many of the complex networks that govern the machinery inside the cell. Several signaling molecules play an important role in disease processes that are a direct result of their altered functioning and are now recognized as potential therapeutic targets. Understanding how to restore the proper functioning of these pathways that have become deregulated in disease, is needed for accelerating biomedical research. This resource is aimed at demystifying the biological pathways and highlights the key relationships and connections between them. Apart from this, pathways provide a way of reducing the dimensionality of high throughput data, by grouping thousands of genes, proteins and metabolites at functional level into just several hundreds of pathways for an experiment. Identifying the active pathways that differ between two conditions can have more explanatory power than just a simple list of differentially expressed genes and proteins.
The Chemical Probes Portal is an online open access catalog of annotated small molecule inhibitors, agonists and other chemical tools for biological research and preclinical drug discovery. Annotations for are extensive and distinguish between activity in cells and model organisms.