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Found 28 result(s)
>>>!!!<<< SMD has been retired. After approximately fifteen years of microarray-centric research service, the Stanford Microarray Database has been retired. We apologize for any inconvenience; please read below for possible resolutions to your queries. If you are looking for any raw data that was directly linked to SMD from a manuscript, please search one of the public repositories. NCBI Gene Expression Omnibus EBI ArrayExpress All published data were previously communicated to one (or both) of the public repositories. Alternatively, data for publications between 1997 and 2004 were likely migrated to the Princeton University MicroArray Database, and are accessible there. If you are looking for a manuscript supplement (i.e. from a domain other than, perhaps try searching the Internet Archive: Wayback Machine . >>>!!!<<< The Stanford Microarray Database (SMD) is a DNA microarray research database that provides a large amount of data for public use.
nmrshiftdb is a NMR database (web database) for organic structures and their nuclear magnetic resonance (nmr) spectra. It allows for spectrum prediction (13C, 1H and other nuclei) as well as for searching spectra, structures and other properties. Last not least, it features peer-reviewed submission of datasets by its users. The nmrshiftdb2 software is open source, the data is published under an open content license. Please consult the documentation for more detailed information. nmrshiftdb2 is the continuation of the NMRShiftDB project with additional data and bugfixes and changes in the software.
The CancerData site is an effort of the Medical Informatics and Knowledge Engineering team (MIKE for short) of Maastro Clinic, Maastricht, The Netherlands. Our activities in the field of medical image analysis and data modelling are visible in a number of projects we are running. CancerData is offering several datasets. They are grouped in collections and can be public or private. You can search for public datasets in the NBIA (National Biomedical Imaging Archive) image archives without logging in.
Intrepid Bioinformatics serves as a community for genetic researchers and scientific programmers who need to achieve meaningful use of their genetic research data – but can’t spend tremendous amounts of time or money in the process. The Intrepid Bioinformatics system automates time consuming manual processes, shortens workflow, and eliminates the threat of lost data in a faster, cheaper, and better environment than existing solutions. The system also provides the functionality and community features needed to analyze the large volumes of Next Generation Sequencing and Single Nucleotide Polymorphism data, which is generated for a wide range of purposes from disease tracking and animal breeding to medical diagnosis and treatment.
Online materials database (known as PAULING FILE project) with nearly 2 million entries: physical properties, crystal structures, phase diagrams, available via API, ready for modern data-intensive applications. The source of these entries are about 300,000 peer-reviewed publications in materials science, processed during the last 16 years by an international team of PhD editors. The results are presented online with a quick search interface. The basic access is provided for free.
The Data and Service Center for the Humanities (DaSCH) is an institution of the Swiss Academy of Humanities and Social Sciences (SAHSS) financed by the State Secretariat for Eduction, Research and Innovation (SERI). The primary goals of the DaSCH are - Preservation of research data in the humanities and their long-term data curation. - Ensuring permanent access to research data in order to make it available for further research and thus facilitating the reuse of existing research data in future research. - Providing services for researchers to assist them with the data management plan. - Encouraging the digital networking of databases created in Switzerland or in other countries. - Collaboration and networking with other institutions on digital literacy. The services of the DaSCH are available to all researchers and projects in Switzerland which work in the the domain of the Humanities and have to deal with digital information as well to other research institutions in Switzerland.
The Magnetics Information Consortium (MagIC) improves research capacity in the Earth and Ocean sciences by maintaining an open community digital data archive for rock magnetic, geomagnetic, archeomagnetic (archaeomagnetic) and paleomagnetic (palaeomagnetic) data. Different parts of the website allow users access to archive, search, visualize, and download these data. MagIC supports the international rock magnetism, geomagnetism, archeomagnetism (archaeomagnetism), and paleomagnetism (palaeomagnetism) research and endeavors to bring data out of private archives, making them accessible to all and (re-)useable for new, creative, collaborative scientific and educational activities. The data in MagIC is used for many types of studies including tectonic plate reconstructions, geomagnetic field models, paleomagnetic field reversal studies, magnetohydrodynamical studies of the Earth's core, magnetostratigraphy, and archeology. MagIC is a domain-specific data repository and directed by PIs who are both producers and consumers of rock, geo, and paleomagnetic data. Funded by NSF since 2003, MagIC forms a major part of which integrates four independent cyber-initiatives rooted in various parts of the Earth, Ocean and Life sciences and education.
<<!! checked 20.03.2017 SumsDB was offline; for more information see!! >> SumsDB (the Surface Management System DataBase) is a repository of brain-mapping data (surfaces & volumes; structural & functional data) from many laboratories.
The MG-RAST server is an open source system for annotation and comparative analysis of metagenomes. Users can upload raw sequence data in fasta format; the sequences will be normalized and processed and summaries automatically generated. The server provides several methods to access the different data types, including phylogenetic and metabolic reconstructions, and the ability to compare the metabolism and annotations of one or more metagenomes and genomes. In addition, the server offers a comprehensive search capability. Access to the data is password protected, and all data generated by the automated pipeline is available for download in a variety of common formats. MG-RAST has become an unofficial repository for metagenomic data, providing a means to make your data public so that it is available for download and viewing of the analysis without registration, as well as a static link that you can use in publications. It also requires that you include experimental metadata about your sample when it is made public to increase the usefulness to the community.
This interface provides access to several types of data related to the Chesapeake Bay. Bay Program databases can be queried based upon user-defined inputs such as geographic region and date range. Each query results in a downloadable, tab- or comma-delimited text file that can be imported to any program (e.g., SAS, Excel, Access) for further analysis. Comments regarding the interface are encouraged. Questions in reference to the data should be addressed to the contact provided on subsequent pages.
DIAS aims at collecting and storing earth observation data; analyzing such data in combination with socio-economic data, and converting data into information useful for crisis management with respect to global-scale environmental disasters, and other threats; and to make this information available within Japan and overseas.
eKlima is a web site to access the database of climate data of the Norwegian Meteorological Institute from an external computer. The database contains measurements made by the Norwegian Meteorological Institute and its collaborators as far back in time as 1957. There are also some data that are older than that, with the longest data sets going as far back in time as 150 years. However, for the period before 1957 not all measurements are completely digitised yet.
EarthWorks is a discovery tool for geospatial (a.k.a. GIS) data. It allows users to search and browse the GIS collections owned by Stanford University Libraries, as well as data collections from many other institutions. Data can be searched spatially, by manipulating a map; by keyword search; by selecting search limiting facets (e.g., limit to a given format type); or by combining these options.
EMAGE (e-Mouse Atlas of Gene Expression) is an online biological database of gene expression data in the developing mouse (Mus musculus) embryo. The data held in EMAGE is spatially annotated to a framework of 3D mouse embryo models produced by EMAP (e-Mouse Atlas Project). These spatial annotations allow users to query EMAGE by spatial pattern as well as by gene name, anatomy term or Gene Ontology (GO) term. EMAGE is a freely available web-based resource funded by the Medical Research Council (UK) and based at the MRC Human Genetics Unit in the Institute of Genetics and Molecular Medicine, Edinburgh, UK.
Within WASCAL a large number of heterogeneous data are collected. These data are mainly coming from different initiated research activities within WASCAL (Core Research Program, Graduate School Program) from the hydrological-meteorological, remote sensing, biodiversity and socio economic observation networks within WASCAL, and from the activities of the WASCAL Competence Center in Ouagadougou, Burkina-Faso.
As a member of SWE-CLARIN, the Humanities Lab will provide tools and expertise related to language archiving, corpus and (meta)data management, with a continued emphasis on multimodal corpora, many of which contain Swedish resources, but also other (often endangered) languages, multilingual or learner corpora. As a CLARIN K-centre we provide advice on multimodal and sensor-based methods, including EEG, eye-tracking, articulography, virtual reality, motion capture, av-recording. Current work targets automatic data retrieval from multimodal data sets, as well as the linking of measurement data (e.g. EEG, fMRI) or geo-demographic data (GIS, GPS) to language data (audio, video, text, annotations). We also provide assistance with speech and language technology related matters to various projects. A primary resource in the Lab is The Humanities Lab corpus server, containing a varied set of multimodal language corpora with standardised metadata and linked layers of annotations and other resources.
The Immunology Database and Analysis Portal (ImmPort) archives clinical study and trial data generated by NIAID/DAIT-funded investigators. Data types housed in ImmPort include subject assessments i.e., medical history, concomitant medications and adverse events as well as mechanistic assay data such as flow cytometry, ELISA, ELISPOT, etc. --- You won't need an ImmPort account to search for compelling studies, peruse study demographics, interventions and mechanistic assays. But why stop there? What you really want to do is download the study, look at each experiment in detail including individual ELISA results and flow cytometry files. Perhaps you want to take those flow cytometry files for a test drive using FLOCK in the ImmPort flow cytometry module. To download all that interesting data you will need to register for ImmPort access.
The Digital Archaeological Record (tDAR) is an international digital repository for the digital records of archaeological investigations. tDAR’s use, development, and maintenance are governed by Digital Antiquity, an organization dedicated to ensuring the long-term preservation of irreplaceable archaeological data and to broadening the access to these data.
UEL Research Repository: the institutional repository of open access publications and research data at the University of East London. As a research archive, it preserves and disseminates scholarly work created by members of the University of East London.
The FAIRDOMHub is built upon the SEEK software suite, which is an open source web platform for sharing scientific research assets, processes and outcomes. FAIRDOM (Web Site) will establish a support and service network for European Systems Biology. It will serve projects in standardizing, managing and disseminating data and models in a FAIR manner: Findable, Accessible, Interoperable and Reusable. FAIRDOM is an initiative to develop a community, and establish an internationally sustained Data and Model Management service to the European Systems Biology community. FAIRDOM is a joint action of ERA-Net EraSysAPP and European Research Infrastructure ISBE.
Modern signal processing and machine learning methods have exciting potential to generate new knowledge that will impact both physiological understanding and clinical care. Access to data - particularly detailed clinical data - is often a bottleneck to progress. The overarching goal of PhysioNet is to accelerate research progress by freely providing rich archives of clinical and physiological data for analysis.
The DMC is designed to provide registered users with access to non-confidential petroleum exploration and production data from offshore Nova Scotia, subject to certain conditions. The DMC is housed in the CNSOPB's Geoscience Research Centre located in Dartmouth, Nova Scotia. Initially, the DMC will manage and distribute the following digital petroleum data: well data (i.e. logs and reports), seismic image files (e.g. TIFF, PDF), and production data. In the future the DMC could be expanded to include operational, safety, environmental, fisheries data, etc.