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Found 65 result(s)

GeneWeaver.org

The Ontological Discovery Environment

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GeneWeaver combines cross-species data and gene entity integration, scalable hierarchical analysis of user data with a community-built and curated data archive of gene sets and gene networks, and tools for data driven comparison of user-defined biological, behavioral and disease concepts. Gene Weaver allows users to integrate gene sets across species, tissue and experimental platform. It differs from conventional gene set over-representation analysis tools in that it allows users to evaluate intersections among all combinations of a collection of gene sets, including, but not limited to annotations to controlled vocabularies. There are numerous applications of this approach. Sets can be stored, shared and compared privately, among user defined groups of investigators, and across all users.

Canue Data Portal

Canadian Urban Environmental Health Research Consortium Data Portal

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Canadian Urban Environmental Health Research Consortium (CANUE) collates and generates standard measures of environmental factors and provides these data to a wide range of health data organizations who pre-link and distribute them to the Canadian research community. Exposure metrics currently distributed by CANUE include air quality (nitrogen dioxide, sulfur dioxide, ozone, and fine particulate matter concentrations), green and blue spaces (Landsat, MODIS, and AVHRR normalized difference vegetation indices), neighborhood factors (access to employment, material and social deprivation indices, marginalization indices, nighttime light, and active living environments), and weather and climate (weather indicators, local climate zones, and water balance).

Wildtrax

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WildTrax is an online platform for storing, managing, and sharing environmental sensor Data. WildTrax was created through a partnership between the University of Alberta, Dr. Erin Bayne and the Bioacoustic Unit, the Alberta Biodiversity Monitoring Institute (ABMI), and Environment and Climate Change Canada (ECCC)

IMGT/3Dstructure-DB and IMGT/2Dstructure-DB

International ImMunoGeneTics information system/3Dstructure-DB and IMGT/2Dstructure-DB

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IMGT/3Dstructure-DB is the IMGT three-dimensional (3D) structure database.

OpenHeritage 3D

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As 3D and reality capture strategies for heritage documentation become more widespread and available, there has emerged a growing need to assist with guiding and facilitating accessibility to data, while maintaining scientific rigor, cultural and ethical sensitivity, discoverability, and archival standards. In response to these areas of need, The Open Heritage 3D Alliance (OHA) has developed as an advisory group governing the Open Heritage 3D initiative. This collaborative advisory group are among some of the earliest adopters of 3D heritage documentation technologies, and offer first-hand guidance for best practices in data management, sharing, and dissemination approaches for 3D cultural heritage projects. The founding members of the OHA, consist of experts and organizational leaders from CyArk, Historic Environment Scotland, and the University of South Florida Libraries, who together have significant repositories of legacy and on-going 3D research and documentation projects. These groups offer unique insight into not only the best practices for 3D data capture and sharing, but also have come together around concerns dealing with standards, formats, approach, ethics, and archive commitment. Together, the OHA has begun the journey to provide open access to cultural heritage 3D data, while maintaining integrity, security, and standards relating to discoverable dissemination. Together, the OHA will work to provide democratized access to primary heritage 3D data submitted from donors and organizations, and will help to facilitate an operation platform, archive, and organization of resources into the future.

Array Express

functional genomics data

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ArrayExpress is one of the major international repositories for high-throughput functional genomics data from both microarray and high-throughput sequencing studies, many of which are supported by peer-reviewed publications. Data sets are submitted directly to ArrayExpress and curated by a team of specialist biological curators. In the past (until 2018) datasets from the NCBI Gene Expression Omnibus database were imported on a weekly basis. Data is collected to MIAME and MINSEQE standards.

Pennsieve Discover

formerly: Blackfynn Discover

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The Pennsieve platform is a cloud-based scientific data management platform focused on integrating complex datasets, fostering collaboration and publishing scientific data according to all FAIR principles of data sharing. The platform is developed to enable individual labs, consortiums, or inter-institutional projects to manage, share and curate data in a secure cloud-based environment and to integrate complex metadata associated with scientific files into a high-quality interconnected data ecosystem. The platform is used as the backend for a number of public repositories including the NIH SPARC Portal and Pennsieve Discover repositories. It supports flexible metadata schemas and a large number of scientific file-formats and modalities.

Earthdata powered by EOSDIS

Earth Observing System Data and Information System

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Earthdata powered by EOSDIS (Earth Observing System Data and Information System) is a key core capability in NASA’s Earth Science Data Systems Program. It provides end-to-end capabilities for managing NASA’s Earth science data from various sources – satellites, aircraft, field measurements, and various other programs. EOSDIS uses the metadata and service discovery tool Earthdata Search https://search.earthdata.nasa.gov/search. The capabilities of EOSDIS constituting the EOSDIS Science Operations are managed by NASA's Earth Science Data and Information System (ESDIS) Project. The capabilities include: generation of higher level (Level 1-4) science data products for several satellite missions; archiving and distribution of data products from Earth observation satellite missions, as well as aircraft and field measurement campaigns. The EOSDIS science operations are performed within a distributed system of many interconnected nodes - Science Investigator-led Processing Systems (SIPS), and distributed, discipline-specific, Earth science Distributed Active Archive Centers (DAACs) with specific responsibilities for production, archiving, and distribution of Earth science data products. The DAACs serve a large and diverse user community by providing capabilities to search and access science data products and specialized services.

Electron Microscopy Data Bank

EMDB

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The Electron Microscopy Data Bank (EMDB) is a public repository for electron microscopy density maps of macromolecular complexes and subcellular structures. It covers a variety of techniques, including single-particle analysis, electron tomography, and electron (2D) crystallography.

AspGD

Aspergillus Genome Database

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>>>>!!!!<<<< AspGD data are being integrated into FungiDB. Please click here for additional details http://fungidb.org/ . Discussion of how to maximize the value of FungiDB for the Aspergillus research community will be a major topic at the upcoming AsperFest12 meeting at Asilomar (March 16-17, 2015). >>>>!!!!<<<< AspGD is an organized collection of genetic and molecular biological information about the filamentous fungi of the genus Aspergillus. Among its many species, the genus contains an excellent model organism (A. nidulans, or its teleomorph Emericella nidulans), an important pathogen of the immunocompromised (A. fumigatus), an agriculturally important toxin producer (A. flavus), and two species used in industrial processes (A. niger and A. oryzae). AspGD contains information about genes and proteins of multiple Aspergillus species; descriptions and classifications of their biological roles, molecular functions, and subcellular localizations; gene, protein, and chromosome sequence information; tools for analysis and comparison of sequences; and links to literature information; as well as a multispecies comparative genomics browser tool (Sybil) for exploration of orthology and synteny across multiple sequenced Aspergillus species.

Johns Hopkins Turbulence Databases

JHTDB

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This website is a portal that enables access to multi-Terabyte turbulence databases. The data reside on several nodes and disks on our database cluster computer and are stored in small 3D subcubes. Positions are indexed using a Z-curve for efficient access.

Cloud-Aerosol Lidar and Infrared Pathfinder Satellite Observations

CALIPSO

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The CALIPSO satellite provides new insight into the role that clouds and atmospheric aerosols play in regulating Earth's weather, climate, and air quality. CALIPSO combines an active lidar instrument with passive infrared and visible imagers to probe the vertical structure and properties of thin clouds and aerosols over the globe. CALIPSO was launched on April 28, 2006, with the CloudSat satellite. CALIPSO and CloudSat are highly complementary and together provide new, never-before-seen 3D perspectives of how clouds and aerosols form, evolve, and affect weather and climate. CALIPSO and CloudSat fly in formation with three other satellites in the A-train constellation to enable an even greater understanding of our climate system.

Research Data Australia

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Research Data Australia is the data discovery service of the Australian Research Data Commons (ARDC). The ARDC is supported by the Australian Government through the National Collaborative Research Infrastructure Strategy Program. Research Data Australia helps you find, access, and reuse data for research from over one hundred Australian research organisations, government agencies, and cultural institutions. We do not store the data itself here but provide descriptions of, and links to, the data from our data publishing partners.

NASA Heliophysics Data Portal

HP Data Portal

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Ever growing search and retrieval site for a comprehensive set of Heliophysics data from NASA and other spacecraft and ground-based observatories.

Canada's National Forest Inventory

Inventaire forestier national du Canada

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The National Forest Inventory (NFI) is a collaborative effort involving federal, provincial and territorial government agencies. They monitor a network of twenty thousand sampling points across Canada on an ongoing basis to provide information on the state of Canada's forests and a continuous record of forest change. They provide data and products to forest science researchers, forest policy decision-makers and interested stakeholders.

District of North Vancouver’s Open Data portal

District of North Vancouver’s GEOweb

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Welcome to the District of North Vancouver’s Open Data portal. Here you have access to many free datasets which you can use in your printed products or online services – completely free of charge. Our datasets are updated automatically and refreshed each week. Every dataset comes with its own metadata providing valuable information on the origin, history, accuracy and completeness of the dataset.

World Data Center for Renewable Resources and Environment

WDC-RRE

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The WDC is concerned with the collection, management, distribution and utilization of data from Chinese provinces, autonomous regions and counties,including: Resource data:management,distribution and utlilzation of land, water, climate, forest, grassland, minerals, energy, etc. Environmental data:pollution,environmental quality, change, natural disasters,soli erosion, etc. Biological resources:animals, plants,wildlife Social economy:agriculture, industry, transport, commerce,infrastructure,etc. Population and labor Geographic background data on scales of 1:4M,1:1M, 1:(1/2)M, 1:2500, etc.

Neotoma Paleoecology Database

Neotoma

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Neotoma is a multiproxy paleoecological database that covers the Pliocene-Quaternary, including modern microfossil samples. The database is an international collaborative effort among individuals from 19 institutions, representing multiple constituent databases. There are over 20 data-types within the Neotoma Paleoecological Database, including pollen microfossils, plant macrofossils, vertebrate fauna, diatoms, charcoal, biomarkers, ostracodes, physical sedimentology and water chemistry. Neotoma provides an underlying cyberinfrastructure that enables the development of common software tools for data ingest, discovery, display, analysis, and distribution, while giving domain scientists control over critical taxonomic and other data quality issues.

IMGT/mAb-DB

ImMunoGeneTics/MAB-DB

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IMGT/mAb-DB provides a unique expertised resource on monoclonal antibodies (mAbs) with diagnostic or therapeutic indications, fusion proteins for immune applications (FPIA), composite proteins for clinical applications (CPCA) and relative proteins of the immune system (RPI) with clinical indications.

CDAWeb

Heliophysics Coordinated Data Analysis Web

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The CDAWeb data system enables improved display and coordinated analysis of multi-instrument, multimission data bases of the kind whose analysis is critical to meeting the science objectives of the ISTP program and the InterAgency Consultative Group (IACG) Solar-Terrestrial Science Initiative. The system combines the client-server user interface technology of the World Wide Web with a powerful set of customized IDL routines to leverage the data format standards (CDF) and guidelines for implementation adopted by ISTP and the IACG. The system can be used with any collection of data granules following the extended set of ISTP/IACG standards. CDAWeb is being used both to support coordinated analysis of public and proprietary data and better functional access to specific public data such as the ISTP-precursor CDAW 9 data base that is formatted to the ISTP/IACG standards. Many data sets are available through the Coordinated Data Analysis Web (CDAWeb) service and the data coverage continues to grow. These are largely, but not exclusively, magnetospheric data and nearby solar wind data of the ISTP era (1992-present) at time resolutions of approximately a minute. The CDAWeb service provides graphical browsing, data subsetting, screen listings, file creations and downloads (ASCII or CDF). Public data from current (1992-present) space physics missions (including Cluster, IMAGE, ISTP, FAST, IMP-8, SAMPEX and others). Public data from missions before 1992 (including IMP-8, ISIS1/2, Alouette2, Hawkeye and others). Public data from all current and past space physics missions. CDAWeb ist part of "Space Physics Data Facility" (https://www.re3data.org/repository/r3d100010168).

Europeana collections

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Europeana is the trusted source of cultural heritage brought to you by the Europeana Foundation and a large number of European cultural institutions, projects and partners. It’s a real piece of team work. Ideas and inspiration can be found within the millions of items on Europeana. These objects include: Images - paintings, drawings, maps, photos and pictures of museum objects Texts - books, newspapers, letters, diaries and archival papers Sounds - music and spoken word from cylinders, tapes, discs and radio broadcasts Videos - films, newsreels and TV broadcasts All texts are CC BY-SA, images and media licensed individually.

DataStream

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DataStream is an open access platform for sharing information on freshwater health. It currently allows users to access, visualize, and download full water quality datasets collected by Indigenous Nations, community groups, researchers and governments throughout four regional hubs in the Atlantic Provinces, Great Lakes and Saint Lawrence Basin, Lake Winnipeg Basin and Mackenzie River Basin. DataStream was developed by The Gordon Foundation and is carried out in collaboration with regional monitoring networks.

Ontario Open Government Data

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This purpose of this repository is to share Ontario's government data sets online to increase transparency and accountability. We're adding to the hundreds of records we’ve released so far to create an inventory of known government data. Data will either be open, restricted, under review or in the process of being made open, depending on the sensitivity of the information.

Archaeology Data Service

ADS

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The ADS is an accredited digital repository for heritage data that supports research, learning and teaching with freely available, high quality and dependable digital resources by preserving and disseminating digital data in the long term. The ADS also promotes good practice in the use of digital data, provides technical advice to the heritage community, and supports the deployment of digital technologies.

Integrated Climate Data Center

ICDC

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The CliSAP-Integrated Climate Data Center (ICDC) allows easy access to climate relevant data from satellite remote sensing and in situ and other measurements in Earth System Sciences. These data are important to determine the status and the changes in the climate system. Additionally some relevant re-analysis data are included, which are modeled on the basis of observational data. ICDC cooperates with the "Zentrum für Nachhaltiges Forschungsdatenmanagement "https://www.fdr.uni-hamburg.de/ to publish observational data with a doi.