Content Types


AID systems



Data access

Data access restrictions

Database access

Database access restrictions

Database licenses

Data licenses

Data upload

Data upload restrictions

Enhanced publication

Institution responsibility type

Institution type


Metadata standards

PID systems

Provider types

Quality management

Repository languages



Repository types


  • * at the end of a keyword allows wildcard searches
  • " quotes can be used for searching phrases
  • + represents an AND search (default)
  • | represents an OR search
  • - represents a NOT operation
  • ( and ) implies priority
  • ~N after a word specifies the desired edit distance (fuzziness)
  • ~N after a phrase specifies the desired slop amount
Found 2554 result(s)
The SICAS Medical Image Repository is a freely accessible repository containing medical research data including medical images, surface models, clinical data, genomics data and statistical shape models. The data can freely be organized and shared on SMIR and made publicly accessible with a DOI. Dedicated data sets are organized as collections of anatomical regions (e.g Cochlea). The data can be filtered using a modular search and accessed on the web or through the SMIR API.
Content type(s)
The Lamont-Doherty Core Repository (LDCR) contains one of the world’s most unique and important collection of scientific samples from the deep sea. Sediment cores from every major ocean and sea are archived at the Core Repository. The collection contains approximately 72,000 meters of core composed of 9,700 piston cores; 7,000 trigger weight cores; and 2,000 other cores such as box, kasten, and large diameter gravity cores. We also hold 4,000 dredge and grab samples, including a large collection of manganese nodules, many of which were recovered by submersibles. Over 100,000 residues are stored and are available for sampling where core material is expended. In addition to physical samples, a database of the Lamont core collection has been maintained for nearly 50 years and contains information on the geographic location of each collection site, core length, mineralogy and paleontology, lithology, and structure, and more recently, the full text of megascopic descriptions.
The goal of the Autophagy Database is to provide up-to-date relevant information including protein structure data to researchers of autophagy, and to disseminate important findings to a wider audience so that their ramifications can be appreciated. For this purpose, we strive to make the database to contain as much pertinent information as possible and to make the contents freely available in a user-friendly format.
The Energy Data eXchange (EDX) is an online collection of capabilities and resources that advance research and customize energy-related needs. EDX is developed and maintained by NETL-RIC researchers and technical computing teams to support private collaboration for ongoing research efforts, and tech transfer of finalized DOE NETL research products. EDX supports NETL-affiliated research by: Coordinating historical and current data and information from a wide variety of sources to facilitate access to research that crosscuts multiple NETL projects/programs; Providing external access to technical products and data published by NETL-affiliated research teams; Collaborating with a variety of organizations and institutions in a secure environment through EDX’s ;Collaborative Workspaces
A repository for high-quality gene models produced by the manual annotation of vertebrate genomes. The final update of Vega, version 68, was released in February 2017 and is now archived at We plan to maintain this resource until Feb 2020.
DBT is the institutional repository of the FSU Jena, the TU Ilmenau and the University of Erfurt as well as members of the other Thuringian universities and colleges can publish scientific documents in the DBT. In individual cases, land users (via the ThULB Jena) can also archive documents in the DBT.
SwissLipids is an expert curated resource that provides a framework for the integration of lipid and lipidomic data with biological knowledge and models.
Content type(s)
The aim of the research project TOPOI II A-2-4 was to re-evaluate archaeological records and finds resulting from earlier investigations within the context of recent and ongoing research across the region.
The Research Data Repository is the University of Essex's online data repository where research data resulting from research taking place within the university can be deposited, published and made accessible to the research community.
UCL Discovery is UCL's open access repository, showcasing and providing access to UCL research publications. UCL Discovery accepts small scale datasets associated with publications.
A community-based search platform. OMICtools bridges the gap between researchers and tool developers. OMICtools brings together an interactive worldwide user community, linking expert curators who submit, review and categorize tools, to users who strengthen the interface by bringing feedback and reviews.
The sequencing of several bird genomes and the anticipated sequencing of many more provided the impetus to develop a model organism database devoted to the taxonomic class: Aves. Birds provide model organisms important to the study of neurobiology, immunology, genetics, development, oncology, virology, cardiovascular biology, evolution and a variety of other life sciences. Many bird species are also important to agriculture, providing an enormous worldwide food source worldwide. Genomic approaches are proving invaluable to studying traits that affect meat yield, disease resistance, behavior, and bone development along with many other factors affecting productivity. In this context, BirdBase will serve both biomedical and agricultural researchers.
Historic Environment Scotland was formed in October 2015 following the merger between Historic Scotland and The Royal Commission on the Ancient and Historical Monuments of Scotland. Historic Environment Scotland is the lead public body established to investigate, care for and promote Scotland’s historic environment. We lead and enable Scotland’s first historic environment strategy Our Place in Time, which sets out how our historic environment will be managed. It ensures our historic environment is cared for, valued and enhanced, both now and for future generations.
The aim of this repository is for it to be a location from which a wide variety of well analysed IFC-based data files can be sourced. It is planned that over time the number of data files will expand to provide significant coverage of the major aspects that would need to be tested for interoperability.
The Rotterdam Ophthalmic Data Repository (ROD-Rep) contains data sets related to ophthalmology that the Rotterdam Ophthalmic Institute has made freely available for researchers worldwide. This portal is an initiative of the Rotterdam Ophthalmic Institute, which is the research institute of the Rotterdam Eye Hospital. It provides the datasets from ophthalmic research (includes measurements such as visual fields and various imaging modalities, grades, etc.) for sharing and re-use to accelerate multi-disciplinary research, resulting in better ophthalmic care. The portal is the successor of the ORGIDS (or Open Rotterdam Glaucoma Imaging Data Sets site); which was an initiative of Koen Vermeer, Hans Lemij and Netty Dorrestijn and initial financial support was provided by Stichting Glaucoomfonds (The Netherlands).
Content type(s)
TrichDB integrated genomic resources for the eukaryotic protist pathogens Trichomonas vaginalis.
APID Interactomes is a database that provides a comprehensive collection of protein interactomes for more than 400 organisms based in the integration of known experimentally validated protein-protein physical interactions (PPIs). Construction of the interactomes is done with a methodological approach to report quality levels and coverage over the proteomes for each organism included. In this way, APID provides interactomes from specific organisms that in 25 cases have more than 500 proteins. As a whole APID includes a comprehensive compendium of 90,379 distinct proteins and 678,441 singular interactions. The analytical and integrative effort done in APID unifies PPIs from primary databases of molecular interactions (BIND, BioGRID, DIP, HPRD, IntAct, MINT) and also from experimentally resolved 3D structures (PDB) where more than two distinct proteins have been identified. In this way, 8,388 structures have been analyzed to find specific protein-protein interactions reported with details of their molecular interfaces. APID also includes a new data visualization web-tool that allows the construction of sub-interactomes using query lists of proteins of interest and the visual exploration of the corresponding networks, including an interactive selection of the properties of the interactions (i.e. the reliability of the "edges" in the network) and an interactive mapping of the functional environment of the proteins (i.e. the functional annotations of the "nodes" in the network).
The Service Centre of the Federal Government for Geo-Information and Geodesy (Dienstleistungszentrum des Bundes für Geoinformation und Geodäsie - DLZ) provides geodetic and geo-topographic reference data of the Federal Government centrally to federal institutions, public administrations, economy, science and citizens. The establishment of the Service Centre is based on the Federal Geographic Reference Data Act (Bundesgeoreferenzdatengesetz − BGeoRG), which came into effect on 1 November 2012. This act regulates use, quality and technology of the geodetic and geo-topographic reference systems, networks and data.
figshare allows researchers to publish all of their research outputs in an easily citable, sharable and discoverable manner. All file formats can be published, including videos and datasets. Optional peer review process. figshare uses creative commons licensing.
The project aims to examine and index the genomic diversity through the generation of complete mitochondrial and nuclear genome sequences of sharks and rays of the Pacific Rim. There is a huge diversity of elasmobranch fishes in this region, but many species are under threat because of poor management and conservation measures in many countries. It is absolutely critical that species’ identities are correct for conservation and fisheries management purposes. This project will provide this clarity of identity for both charismatic and commercially important species through the inclusion of ‘genetypes’ (ie., BioVouchers) and the application of genetic tools that utilize whole mitochondrial and nuclear genome sequences.
The Comparative RNA Web (CRW) Site disseminates information about RNA structure and evolution that has been determined using comparative sequence analysis. We present both raw (sequences, structure models, metadata) and processed (analyses, evolution, accuracy) data, organized into four main sections.
The CosmoSim database provides results from cosmological simulations performed within different projects: the MultiDark and Bolshoi project, and the CLUES project. The CosmoSim webpage provides access to several cosmological simulations, with a separate database for each simulation. Simulations overview: . CosmoSim is a contribution to the German Astrophysical Virtual Observatory.
Senckenberg Data and Modelling Centre developed and maintains this metadata catalog and data repository (MetaCat) to support scientific data and projects of Senckenberg. Senckenberg Data and Modelling Centre commits to facilitate access to and exchange of data while observing data owner rights and standards for data exchange.
IID (Integrated Interaction Database) is an on-line database of known and predicted eukaryotic protein-protein interactions, in 30 tissues of model organisms and humans.