The ProteomeXchange consortium has been set up to provide a single point of submission of MS proteomics data to the main existing proteomics repositories, and to encourage the data exchange between them for optimal data dissemination.
Current members accepting submissions are:
The PRIDE PRoteomics IDEntifications database at the European Bioinformatics Institute focusing mainly on shotgun mass spectrometry proteomics data
PeptideAtlas/PASSEL focusing on SRM/MRM datasets.
ProteomeXchange is covered by SCOPUS. Tutorial for submissions: http://www.proteomexchange.org/sites/proteomexchange.org/files/documents/px_submission_tutorial.pdf
Project organization/partners: http://www.proteomexchange.org/project-organization